hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20110422/iprscan-20110422-02563209/chunk_1/iprscan-20110422-02563209.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: on22450
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF00879.9.fs    Defensin propeptide                     110.8    1.2e-31   1
PF00879.9.ls    Defensin propeptide                     112.7    9.8e-31   1
PF00323.10.fs   Mammalian defensin                       47.0    2.6e-12   1
PF00323.10.ls   Mammalian defensin                       49.0    1.5e-11   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF00879.9.fs      1/1       1    52 [.     1    54 []   110.8  1.2e-31
PF00879.9.ls      1/1       1    52 [.     1    54 []   112.7  9.8e-31
PF00323.10.fs     1/1      65    93 ..     1    29 []    47.0  2.6e-12
PF00323.10.ls     1/1      65    93 ..     1    29 []    49.0  1.5e-11

Alignments of top-scoring domains:
PF00879.9.fs: domain 1 of 1, from 1 to 52: score 110.8, E = 1.2e-31
                   *->MRTLaLLaAiLLvALQAQAEplqaraDEapdeQeQpgaReDQDvsIS
                      MRT+a+LaAiLLvALQAQAE+lq+raDEa++ Q+Q+g+ ++QD++IS
     on22450     1    MRTIAILAAILLVALQAQAESLQERADEATT-QKQSGE-DNQDLAIS 45   

                   Fagdess<-*
                   Fag++ s   
     on22450    46 FAGNGLS    52   

PF00879.9.ls: domain 1 of 1, from 1 to 52: score 112.7, E = 9.8e-31
                   *->MRTLaLLaAiLLvALQAQAEplqaraDEapdeQeQpgaReDQDvsIS
                      MRT+a+LaAiLLvALQAQAE+lq+raDEa++ Q+Q+g+ ++QD++IS
     on22450     1    MRTIAILAAILLVALQAQAESLQERADEATT-QKQSGE-DNQDLAIS 45   

                   Fagdess<-*
                   Fag++ s   
     on22450    46 FAGNGLS    52   

PF00323.10.fs: domain 1 of 1, from 65 to 93: score 47.0, E = 2.6e-12
                   *->CyCRrrlCrrrERrsGtCriqGrlytfCC<-*
                      CyCR+++C++rE++sG+C+i+Grly++CC   
     on22450    65    CYCRTGRCATRESLSGVCEISGRLYRLCC    93   

PF00323.10.ls: domain 1 of 1, from 65 to 93: score 49.0, E = 1.5e-11
                   *->CyCRrrlCrrrERrsGtCriqGrlytfCC<-*
                      CyCR+++C++rE++sG+C+i+Grly++CC   
     on22450    65    CYCRTGRCATRESLSGVCEISGRLYRLCC    93   

//