# /hgtech/tools/solaris8/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -Oon22406.fasta.nr -Q on22406.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 on22406, 94 aa vs /cdna2/lib/nr/nr library 4381652725 residues in 12843305 sequences statistics sampled from 60000 to 12842581 sequences Expectation_n fit: rho(ln(x))= 4.6825+/-0.000187; mu= 6.6289+/- 0.011 mean_var=60.9465+/-12.163, 0's: 28 Z-trim: 28 B-trim: 1407 in 1/65 Lambda= 0.164286 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(12843305) gi|30316322|sp|P59665.1|DEF1_HUMAN RecName: Full=N ( 94) 644 160.0 8e-38 gi|30316323|sp|P59666.1|DEF3_HUMAN RecName: Full=N ( 94) 637 158.3 2.5e-37 gi|60810228|gb|AAX36142.1| defensin alpha 1 [synth ( 95) 637 158.3 2.5e-37 gi|62286499|sp|Q5G863.1|DEF1_PANTR RecName: Full=N ( 94) 621 154.5 3.5e-36 gi|114618704|ref|XP_001146335.1| PREDICTED: simila ( 101) 621 154.5 3.7e-36 gi|114618712|ref|XP_001146558.1| PREDICTED: simila ( 94) 614 152.9 1.1e-35 gi|114618710|ref|XP_001146621.1| PREDICTED: simila ( 101) 614 152.9 1.2e-35 gi|114618734|ref|XP_001174926.1| PREDICTED: simila ( 94) 613 152.6 1.3e-35 gi|297713384|ref|XP_002833165.1| PREDICTED: neutro ( 94) 560 140.1 7.8e-32 gi|6409288|gb|AAF07925.1|AF184159_1 alpha-defensin ( 96) 547 137.0 6.7e-31 gi|6409290|gb|AAF07926.1|AF184160_1 alpha-defensin ( 96) 545 136.5 9.4e-31 gi|38502875|sp|P60030.1|DEF1_MACMU RecName: Full=N ( 96) 540 135.3 2.1e-30 gi|38502876|sp|P60031.1|DEF3_MACMU RecName: Full=N ( 96) 532 133.4 7.9e-30 gi|38502877|sp|P60032.1|DEF8_MACMU RecName: Full=N ( 96) 529 132.7 1.3e-29 gi|296221575|ref|XP_002756802.1| PREDICTED: neutro ( 94) 481 121.3 3.4e-26 gi|7702778|gb|AAA35753.2| neutrophil peptide 3 pre ( 65) 470 118.6 1.6e-25 gi|297682223|ref|XP_002818826.1| PREDICTED: neutro ( 97) 304 79.4 1.5e-13 gi|296221565|ref|XP_002756821.1| PREDICTED: neutro ( 97) 303 79.2 1.7e-13 gi|119600894|gb|EAW80488.1| hCG1779270 [Homo sapie ( 94) 291 76.3 1.2e-12 gi|62286495|sp|Q5G859.1|DEF7_PANTR RecName: Full=D ( 94) 288 75.6 2e-12 gi|62286498|sp|Q5G862.1|DEF4_PANTR RecName: Full=N ( 97) 283 74.4 4.7e-12 gi|399352|sp|P12838.2|DEF4_HUMAN RecName: Full=Neu ( 97) 280 73.7 7.6e-12 gi|62286497|sp|Q5G861.1|DEF5_PANTR RecName: Full=D ( 94) 274 72.3 2e-11 gi|109085551|ref|XP_001083971.1| PREDICTED: defens ( 94) 270 71.3 3.8e-11 gi|399353|sp|Q01523.1|DEF5_HUMAN RecName: Full=Def ( 94) 270 71.3 3.8e-11 gi|58429942|gb|AAW78346.1| defensin alpha 2 [Papio ( 94) 270 71.3 3.8e-11 gi|57491028|gb|AAW51369.1| alpha-defensin 5 precur ( 97) 270 71.3 3.9e-11 gi|297298883|ref|XP_002805298.1| PREDICTED: defens ( 138) 270 71.5 5.2e-11 gi|297713341|ref|XP_002833147.1| PREDICTED: defens ( 94) 267 70.6 6.3e-11 gi|297682229|ref|XP_002818829.1| PREDICTED: defens ( 94) 265 70.1 8.7e-11 gi|57491015|gb|AAW51368.1| alpha-defensin 4 precur ( 94) 264 69.9 1e-10 gi|256261645|gb|ACU65943.1| alpha-defensin [Mammut ( 94) 261 69.2 1.7e-10 gi|57490954|gb|AAW51366.1| alpha-defensin 2 precur ( 94) 257 68.2 3.3e-10 gi|109085553|ref|XP_001084121.1| PREDICTED: defens ( 126) 258 68.6 3.5e-10 gi|57490984|gb|AAW51367.1| alpha-defensin 3 precur ( 94) 256 68.0 3.8e-10 gi|399354|sp|Q01524.1|DEF6_HUMAN RecName: Full=Def ( 100) 251 66.8 9.1e-10 gi|254839344|pdb|3GNY|A Chain A, Crystal Structure ( 30) 245 65.0 9.7e-10 gi|261824920|pdb|3HJ2|A Chain A, Crystal Structure ( 33) 245 65.0 1e-09 gi|58429940|gb|AAW78345.1| defensin alpha 1 [Papio ( 97) 247 65.9 1.7e-09 gi|229858|pdb|1DFN|A Chain A, Crystal Structure Of ( 30) 240 63.8 2.2e-09 gi|296221577|ref|XP_002756826.1| PREDICTED: defens ( 94) 245 65.4 2.3e-09 gi|62286496|sp|Q5G860.1|DEF6_PANTR RecName: Full=D ( 100) 245 65.4 2.4e-09 gi|261278732|pdb|3HJD|A Chain A, X-Ray Structure O ( 30) 239 63.6 2.6e-09 gi|290790318|pdb|3LVX|A Chain A, Crystal Structure ( 30) 239 63.6 2.6e-09 gi|109085533|ref|XP_001098733.1| PREDICTED: defens ( 100) 244 65.2 2.9e-09 gi|290790029|pdb|3H6C|A Chain A, Crystal Structure ( 30) 237 63.1 3.6e-09 gi|290790266|pdb|3LO4|A Chain A, Crystal Structure ( 30) 236 62.9 4.3e-09 gi|1200182|gb|AAC50382.1| defensin 6 [Homo sapiens ( 101) 241 64.5 4.8e-09 gi|290790264|pdb|3LO2|A Chain A, Crystal Structure ( 30) 235 62.6 5e-09 gi|290790263|pdb|3LO1|A Chain A, Crystal Structure ( 30) 235 62.6 5e-09 >>gi|30316322|sp|P59665.1|DEF1_HUMAN RecName: Full=Neutr (94 aa) initn: 644 init1: 644 opt: 644 Z-score: 839.2 bits: 160.0 E(): 8e-38 Smith-Waterman score: 644; 100.000% identity (100.000% similar) in 94 aa overlap (1-94:1-94) 10 20 30 40 50 60 on2240 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|303 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS 10 20 30 40 50 60 70 80 90 on2240 RKNMACYCRIPACIAGERRYGTCIYQGRLWAFCC :::::::::::::::::::::::::::::::::: gi|303 RKNMACYCRIPACIAGERRYGTCIYQGRLWAFCC 70 80 90 >>gi|30316323|sp|P59666.1|DEF3_HUMAN RecName: Full=Neutr (94 aa) initn: 637 init1: 637 opt: 637 Z-score: 830.2 bits: 158.3 E(): 2.5e-37 Smith-Waterman score: 637; 98.936% identity (98.936% similar) in 94 aa overlap (1-94:1-94) 10 20 30 40 50 60 on2240 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|303 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS 10 20 30 40 50 60 70 80 90 on2240 RKNMACYCRIPACIAGERRYGTCIYQGRLWAFCC :::: ::::::::::::::::::::::::::::: gi|303 RKNMDCYCRIPACIAGERRYGTCIYQGRLWAFCC 70 80 90 >>gi|60810228|gb|AAX36142.1| defensin alpha 1 [synthetic (95 aa) initn: 637 init1: 637 opt: 637 Z-score: 830.1 bits: 158.3 E(): 2.5e-37 Smith-Waterman score: 637; 98.936% identity (98.936% similar) in 94 aa overlap (1-94:1-94) 10 20 30 40 50 60 on2240 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|608 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS 10 20 30 40 50 60 70 80 90 on2240 RKNMACYCRIPACIAGERRYGTCIYQGRLWAFCC :::: ::::::::::::::::::::::::::::: gi|608 RKNMDCYCRIPACIAGERRYGTCIYQGRLWAFCCL 70 80 90 >>gi|62286499|sp|Q5G863.1|DEF1_PANTR RecName: Full=Neutr (94 aa) initn: 621 init1: 621 opt: 621 Z-score: 809.7 bits: 154.5 E(): 3.5e-36 Smith-Waterman score: 621; 95.745% identity (97.872% similar) in 94 aa overlap (1-94:1-94) 10 20 30 40 50 60 on2240 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS :::::::::::::::::::::::::::::::::::: :: :::::::::::::::::::: gi|622 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIPADNPEVVVSLAWDESLAPKHPGS 10 20 30 40 50 60 70 80 90 on2240 RKNMACYCRIPACIAGERRYGTCIYQGRLWAFCC :::.:::::::::.:::::::::::::::::::: gi|622 RKNVACYCRIPACLAGERRYGTCIYQGRLWAFCC 70 80 90 >>gi|114618704|ref|XP_001146335.1| PREDICTED: similar to (101 aa) initn: 621 init1: 621 opt: 621 Z-score: 809.3 bits: 154.5 E(): 3.7e-36 Smith-Waterman score: 621; 95.745% identity (97.872% similar) in 94 aa overlap (1-94:8-101) 10 20 30 40 50 on2240 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESL :::::::::::::::::::::::::::::::::::: :: ::::::::::::: gi|114 MRMVTPAMRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIPADNPEVVVSLAWDESL 10 20 30 40 50 60 60 70 80 90 on2240 APKHPGSRKNMACYCRIPACIAGERRYGTCIYQGRLWAFCC ::::::::::.:::::::::.:::::::::::::::::::: gi|114 APKHPGSRKNVACYCRIPACLAGERRYGTCIYQGRLWAFCC 70 80 90 100 >>gi|114618712|ref|XP_001146558.1| PREDICTED: similar to (94 aa) initn: 614 init1: 614 opt: 614 Z-score: 800.7 bits: 152.9 E(): 1.1e-35 Smith-Waterman score: 614; 94.681% identity (96.809% similar) in 94 aa overlap (1-94:1-94) 10 20 30 40 50 60 on2240 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS :::::::::::::::::::::::::::::::::::: :: ::::::::::.::::::::: gi|114 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIPADNPEVVVSLAWDKSLAPKHPGS 10 20 30 40 50 60 70 80 90 on2240 RKNMACYCRIPACIAGERRYGTCIYQGRLWAFCC :::::::::::::.::: :::::::::::::::: gi|114 RKNMACYCRIPACLAGETRYGTCIYQGRLWAFCC 70 80 90 >>gi|114618710|ref|XP_001146621.1| PREDICTED: similar to (101 aa) initn: 614 init1: 614 opt: 614 Z-score: 800.3 bits: 152.9 E(): 1.2e-35 Smith-Waterman score: 614; 94.681% identity (96.809% similar) in 94 aa overlap (1-94:8-101) 10 20 30 40 50 on2240 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESL :::::::::::::::::::::::::::::::::::: :: ::::::::::.:: gi|114 MRMVTPAMRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIPADNPEVVVSLAWDKSL 10 20 30 40 50 60 60 70 80 90 on2240 APKHPGSRKNMACYCRIPACIAGERRYGTCIYQGRLWAFCC ::::::::::::::::::::.::: :::::::::::::::: gi|114 APKHPGSRKNMACYCRIPACLAGETRYGTCIYQGRLWAFCC 70 80 90 100 >>gi|114618734|ref|XP_001174926.1| PREDICTED: similar to (94 aa) initn: 613 init1: 613 opt: 613 Z-score: 799.5 bits: 152.6 E(): 1.3e-35 Smith-Waterman score: 613; 94.681% identity (96.809% similar) in 94 aa overlap (1-94:1-94) 10 20 30 40 50 60 on2240 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS : :::::::::::::::::::::::::::::::::: :: :::::::::::::::::::: gi|114 MSTLAILAAILLVALQAQAEPLQARADEVAAAPEQIPADNPEVVVSLAWDESLAPKHPGS 10 20 30 40 50 60 70 80 90 on2240 RKNMACYCRIPACIAGERRYGTCIYQGRLWAFCC :::.:::::::::.:::::::::::::::::::: gi|114 RKNVACYCRIPACLAGERRYGTCIYQGRLWAFCC 70 80 90 >>gi|297713384|ref|XP_002833165.1| PREDICTED: neutrophil (94 aa) initn: 560 init1: 560 opt: 560 Z-score: 731.6 bits: 140.1 E(): 7.8e-32 Smith-Waterman score: 560; 87.234% identity (92.553% similar) in 94 aa overlap (1-94:1-94) 10 20 30 40 50 60 on2240 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGS :::::::::::::::::::::::::.:: ::: ::: :: :::::::::::::::: :: gi|297 MRTLAILAAILLVALQAQAEPLQARGDEFAAAQEQIPADNPEVVVSLAWDESLAPKDSGS 10 20 30 40 50 60 70 80 90 on2240 RKNMACYCRIPACIAGERRYGTCIYQGRLWAFCC :::::: ::::.:.:::::::::.::::.::::: gi|297 RKNMACACRIPSCLAGERRYGTCFYQGRVWAFCC 70 80 90 >>gi|6409288|gb|AAF07925.1|AF184159_1 alpha-defensin 1 [ (96 aa) initn: 548 init1: 294 opt: 547 Z-score: 714.8 bits: 137.0 E(): 6.7e-31 Smith-Waterman score: 547; 84.375% identity (92.708% similar) in 96 aa overlap (1-94:1-96) 10 20 30 40 50 on2240 MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKH--P :::::::::::::::::::::::::.::..:: ::: .: :::::::::::::::: : gi|640 MRTLAILAAILLVALQAQAEPLQARTDEATAAQEQIPTDNPEVVVSLAWDESLAPKDSVP 10 20 30 40 50 60 60 70 80 90 on2240 GSRKNMACYCRIPACIAGERRYGTCIYQGRLWAFCC : :::::::::::::.:::::::::.:.::.::::: gi|640 GLRKNMACYCRIPACLAGERRYGTCFYMGRVWAFCC 70 80 90 94 residues in 1 query sequences 4381652725 residues in 12843305 library sequences Tcomplib [34.26] (4 proc) start: Thu Apr 21 20:25:05 2011 done: Thu Apr 21 20:31:23 2011 Total Scan time: 909.130 Total Display time: 0.000 Function used was FASTA [version 34.26.5 April 26, 2007]