hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20110421/iprscan-20110421-20312538/chunk_1/iprscan-20110421-20312538.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: on22406 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00048 51.5 1.1e-10 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00048 1/1 66 94 .] 1 34 [] 51.5 1.1e-10 Alignments of top-scoring domains: SM00048: domain 1 of 1, from 66 to 94: score 51.5, E = 1.1e-10 *->CyknGGiCRrrrCprrERriGtCrirGrrytfCC<-* Cy CR++ C+ +ERr+GtC+++Gr++ fCC on22406 66 CY-----CRIPACIAGERRYGTCIYQGRLWAFCC 94 //