hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20110421/iprscan-20110421-20312538/chunk_1/iprscan-20110421-20312538.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: on22406
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF00879.9.fs    Defensin propeptide                     100.0    1.7e-28   1
PF00879.9.ls    Defensin propeptide                     102.0    1.7e-27   1
PF00323.10.fs   Mammalian defensin                       57.5      3e-15   1
PF00323.10.ls   Mammalian defensin                       59.5      1e-14   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF00879.9.fs      1/1       1    53 [.     1    54 []   100.0  1.7e-28
PF00879.9.ls      1/1       1    53 [.     1    54 []   102.0  1.7e-27
PF00323.10.fs     1/1      66    94 .]     1    29 []    57.5    3e-15
PF00323.10.ls     1/1      66    94 .]     1    29 []    59.5    1e-14

Alignments of top-scoring domains:
PF00879.9.fs: domain 1 of 1, from 1 to 53: score 100.0, E = 1.7e-28
                   *->MRTLaLLaAiLLvALQAQAEplqaraDEapdeQ.eQpgaReDQDvsI
                      MRTLa+LaAiLLvALQAQAEplqaraDE+++ ++eQ++a ++++v++
     on22406     1    MRTLAILAAILLVALQAQAEPLQARADEVAA-ApEQIAA-DIPEVVV 45   

                   SFagdess<-*
                   S+a+des    
     on22406    46 SLAWDESL    53   

PF00879.9.ls: domain 1 of 1, from 1 to 53: score 102.0, E = 1.7e-27
                   *->MRTLaLLaAiLLvALQAQAEplqaraDEapdeQ.eQpgaReDQDvsI
                      MRTLa+LaAiLLvALQAQAEplqaraDE+++ ++eQ++a ++++v++
     on22406     1    MRTLAILAAILLVALQAQAEPLQARADEVAA-ApEQIAA-DIPEVVV 45   

                   SFagdess<-*
                   S+a+des    
     on22406    46 SLAWDESL    53   

PF00323.10.fs: domain 1 of 1, from 66 to 94: score 57.5, E = 3e-15
                   *->CyCRrrlCrrrERrsGtCriqGrlytfCC<-*
                      CyCR+++C+++ERr+GtC++qGrl++fCC   
     on22406    66    CYCRIPACIAGERRYGTCIYQGRLWAFCC    94   

PF00323.10.ls: domain 1 of 1, from 66 to 94: score 59.5, E = 1e-14
                   *->CyCRrrlCrrrERrsGtCriqGrlytfCC<-*
                      CyCR+++C+++ERr+GtC++qGrl++fCC   
     on22406    66    CYCRIPACIAGERRYGTCIYQGRLWAFCC    94   

//