hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20081107/iprscan-20081107-21212501/chunk_1/iprscan-20081107-21212501.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: on19334 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01534.7.ls Frizzled/Smoothened family membrane region 635.1 5.4e-188 1 PF01534.7.fs Frizzled/Smoothened family membrane region 633.2 2.1e-187 1 PF01392.12.fs Fz domain 112.6 7.6e-38 1 PF01392.12.ls Fz domain 114.4 3e-31 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01392.12.fs 1/1 64 179 .. 1 147 [] 112.6 7.6e-38 PF01392.12.ls 1/1 64 179 .. 1 147 [] 114.4 3e-31 PF01534.7.fs 1/1 220 555 .. 1 343 [] 633.2 2.1e-187 PF01534.7.ls 1/1 220 555 .. 1 343 [] 635.1 5.4e-188 Alignments of top-scoring domains: PF01392.12.fs: domain 1 of 1, from 64 to 179: score 112.6, E = 7.6e-38 *->gertarCepiraipmCkglgYNhtlmPNlLgHetGsqkeaeleqEll + r+a+Cep+r ++C g+ +++ ++lL ++ sq+ea+++ on19334 64 CGRAAPCEPLR-YNVCLGSVLPYGATSTLLAGDSDSQEEAHGK---- 105 llsqftpLlkvSlHLpkCspdlrfFLCslyaPvC.teglrepppipPCRs l ++ L + p+C++ ++++LC++y+P+C+++++ +P+R on19334 106 -LVLWSGLRNA----PRCWAVIQPLLCAVYMPKCeNDRV-----ELPSRT 145 lCEavrelgCepvmeamEkkerrsnpfgfaWPesLdCskfPvpeddeelC lC+a+r +C++v ++ ++WP++L+C+ ++pe +C on19334 146 LCQATRG-PCAIVERE------------RGWPDFLRCTPDRFPE----GC 178 m<-* + on19334 179 T 179 PF01392.12.ls: domain 1 of 1, from 64 to 179: score 114.4, E = 3e-31 *->gertarCepiraipmCkglgYNhtlmPNlLgHetGsqkeaeleqEll + r+a+Cep+r ++C g+ +++ ++lL ++ sq+ea+++ on19334 64 CGRAAPCEPLR-YNVCLGSVLPYGATSTLLAGDSDSQEEAHGK---- 105 llsqftpLlkvSlHLpkCspdlrfFLCslyaPvC.teglrepppipPCRs l ++ L + p+C++ ++++LC++y+P+C+++++ +P+R on19334 106 -LVLWSGLRNA----PRCWAVIQPLLCAVYMPKCeNDRV-----ELPSRT 145 lCEavrelgCepvmeamEkkerrsnpfgfaWPesLdCskfPvpeddeelC lC+a+r +C++v ++ ++WP++L+C+ ++pe +C on19334 146 LCQATRG-PCAIVERE------------RGWPDFLRCTPDRFPE----GC 178 m<-* + on19334 179 T 179 PF01534.7.fs: domain 1 of 1, from 220 to 555: score 633.2, E = 2.1e-187 *->mlFsedEkrfarsWigvwSalCflSTLFTvlTFLIDmkNRFrYPERP +lF+e+E+++++s+i++++a+++l+TLFT++TF++D++N++rYP+++ on19334 220 PLFTEAEHQDMHSYIAAFGAVTGLCTLFTLATFVADWRNSNRYPAVI 266 IiFLSaCYlivSlgYLiglvlGaresvaCrkaeeaeagertvtqgstent +++++aC++++S+g+L+++++Gar++++Cr a++++r+++++s e++ on19334 267 LFYVNACFFVGSIGWLAQFMDGARREIVCR----ADGTMRLGEPTSNETL 312 sCtvlFlllYFFgMAssvWWViLtlTWFLAAglKWGthEAIeakssYFHl sC+++F+++Y+++MA++vW+V+Lt++W++++++ ++t++++++k+sYFHl on19334 313 SCVIIFVIVYYALMAGVVWFVVLTYAWHTSFKALGTTYQPLSGKTSYFHL 362 aAWglPavlTItvLalnkVDGDelsGiCfVGnlNldaLrgFVLaPLclyL ++W+lP+vlT+++La+++VDGD++sGiCfVG++N+++++gFVLaP++l+L on19334 363 LTWSLPFVLTVAILAVAQVDGDSVSGICFVGYKNYRYRAGFVLAPIGLVL 412 viGtsFLlaGfvSLFrIRsviktdgsetktdKLeKLMvRIGvFsvLYtVP ++G++FL++G+++LF+I+s++++ se++++K++++M+R+G+F++L++++ on19334 413 IVGGYFLIRGVMTLFSIKSNHPGLLSEKAASKINETMLRLGIFGFLAFGF 462 aliviaCyfYEqanrdeWerswldcickqysDReLvtiPcPvkdksgdp. +li+++C+fY+++n++eWers++d++++q++ vti++P+k++++d++ on19334 463 VLITFSCHFYDFFNQAEWERSFRDYVLCQAN----VTIGLPTKQPIPDCe 508 earPeslaVfmlKylmsLvVGItsgvWVwSsKTlesWrrfirrlcgr<-* +++++sl V+++++++++++GI++++WVw+++Tl +Wrr+++rl+g on19334 509 IKNRPSLLVEKINLFAMFGTGIAMSTWVWTKATLLIWRRTWCRLTGQ 555 PF01534.7.ls: domain 1 of 1, from 220 to 555: score 635.1, E = 5.4e-188 *->mlFsedEkrfarsWigvwSalCflSTLFTvlTFLIDmkNRFrYPERP +lF+e+E+++++s+i++++a+++l+TLFT++TF++D++N++rYP+++ on19334 220 PLFTEAEHQDMHSYIAAFGAVTGLCTLFTLATFVADWRNSNRYPAVI 266 IiFLSaCYlivSlgYLiglvlGaresvaCrkaeeaeagertvtqgstent +++++aC++++S+g+L+++++Gar++++Cr a++++r+++++s e++ on19334 267 LFYVNACFFVGSIGWLAQFMDGARREIVCR----ADGTMRLGEPTSNETL 312 sCtvlFlllYFFgMAssvWWViLtlTWFLAAglKWGthEAIeakssYFHl sC+++F+++Y+++MA++vW+V+Lt++W++++++ ++t++++++k+sYFHl on19334 313 SCVIIFVIVYYALMAGVVWFVVLTYAWHTSFKALGTTYQPLSGKTSYFHL 362 aAWglPavlTItvLalnkVDGDelsGiCfVGnlNldaLrgFVLaPLclyL ++W+lP+vlT+++La+++VDGD++sGiCfVG++N+++++gFVLaP++l+L on19334 363 LTWSLPFVLTVAILAVAQVDGDSVSGICFVGYKNYRYRAGFVLAPIGLVL 412 viGtsFLlaGfvSLFrIRsviktdgsetktdKLeKLMvRIGvFsvLYtVP ++G++FL++G+++LF+I+s++++ se++++K++++M+R+G+F++L++++ on19334 413 IVGGYFLIRGVMTLFSIKSNHPGLLSEKAASKINETMLRLGIFGFLAFGF 462 aliviaCyfYEqanrdeWerswldcickqysDReLvtiPcPvkdksgdp. +li+++C+fY+++n++eWers++d++++q++ vti++P+k++++d++ on19334 463 VLITFSCHFYDFFNQAEWERSFRDYVLCQAN----VTIGLPTKQPIPDCe 508 earPeslaVfmlKylmsLvVGItsgvWVwSsKTlesWrrfirrlcgr<-* +++++sl V+++++++++++GI++++WVw+++Tl +Wrr+++rl+g on19334 509 IKNRPSLLVEKINLFAMFGTGIAMSTWVWTKATLLIWRRTWCRLTGQ 555 //