hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20081113/iprscan-20081113-02355842/chunk_1/iprscan-20081113-02355842.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: on14844 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00069.15.ls Protein kinase domain 369.9 3.8e-108 1 PF00069.15.fs Protein kinase domain 368.0 1.4e-107 1 PF07714.7.fs Protein tyrosine kinase 57.3 1.6e-16 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00069.15.fs 1/1 23 279 .. 1 287 [] 368.0 1.4e-107 PF07714.7.fs 1/1 23 145 .. 1 139 [. 57.3 1.6e-16 PF00069.15.ls 1/1 23 279 .. 1 287 [] 369.9 3.8e-108 Alignments of top-scoring domains: PF00069.15.fs: domain 1 of 1, from 23 to 279: score 368.0, E = 1.4e-107 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr +e++e+lG G+f++V +a +k tgk++AvK+i+k+ k k+ + + on14844 23 FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKE-SSIEN 68 lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse Ei++l++++H+NIv l d++e+++hlylV+ ++ gG +Lfd++ on14844 69 --EIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGG----ELFDRIV- 111 trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngv +kg + +e++a ++Q+l +++YLH++gi+HRDLKPeN+L+ ++++ on14844 112 --EKGFY--TEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDE 157 vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkvD +++ i+DFGl+k ++++ ++t +GTp+Y+APEvl +++y+++vD on14844 158 E-SKIMISDFGLSKM--EgKGDvMSTACGTPGYVAPEVLA-QKPYSKAVD 203 vWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspewdsi WS+Gvi y+ll+G+pPF++e ++ +l+++il++++efdsp+wd+i on14844 204 CWSIGVIAYILLCGYPPFYDE-----NDSKLFEQILKAEYEFDSPYWDDI 248 srsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* s ++akd+i+++ +kDP+kR+t+e++ HPw+ on14844 249 S-----------DSAKDFIRNLMEKDPNKRYTCEQAARHPWI 279 PF07714.7.fs: domain 1 of 1, from 23 to 145: score 57.3, E = 1.6e-16 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtL.keigaseeei +++ ++LG GaF eV++++ k t+ AVK+++k+ +e on14844 23 FEFKETLGTGAFSEVVLAEEK----ATGKLFAVKCIpKK-ALKGKE- 63 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpglyiVtEymegGd + +E+++++k+ +H+NiV L + + + ly+V+ ++ gG on14844 64 --SSIENEIAVLRKI-KHENIVALEDIYE--SPNH---LYLVMQLVSGGE 105 LldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDL<-* L d + ++ t kd +Q+ ++ YL+++++vHRDL on14844 106 LFDRIVE---KGFYTEKDASTLIRQVLDAVYYLHRMGIVHRDL 145 PF00069.15.ls: domain 1 of 1, from 23 to 279: score 369.9, E = 3.8e-108 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr +e++e+lG G+f++V +a +k tgk++AvK+i+k+ k k+ + + on14844 23 FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKE-SSIEN 68 lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse Ei++l++++H+NIv l d++e+++hlylV+ ++ gG +Lfd++ on14844 69 --EIAVLRKIKHENIVALEDIYESPNHLYLVMQLVSGG----ELFDRIV- 111 trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILldnngv +kg + +e++a ++Q+l +++YLH++gi+HRDLKPeN+L+ ++++ on14844 112 --EKGFY--TEKDASTLIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDE 157 vdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkvD +++ i+DFGl+k ++++ ++t +GTp+Y+APEvl +++y+++vD on14844 158 E-SKIMISDFGLSKM--EgKGDvMSTACGTPGYVAPEVLA-QKPYSKAVD 203 vWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspewdsi WS+Gvi y+ll+G+pPF++e ++ +l+++il++++efdsp+wd+i on14844 204 CWSIGVIAYILLCGYPPFYDE-----NDSKLFEQILKAEYEFDSPYWDDI 248 srsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* s ++akd+i+++ +kDP+kR+t+e++ HPw+ on14844 249 S-----------DSAKDFIRNLMEKDPNKRYTCEQAARHPWI 279 //