hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20081029/iprscan-20081029-11372399/chunk_1/iprscan-20081029-11372399.nocrc
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Query sequence: on13133
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                          89.9    7.2e-24   3
PF00096.16.fs Zinc finger, C2H2 type                          83.9    4.5e-22   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.fs   1/3     200   224 ..     1    24 []    26.5  2.3e-05
PF00096.16.ls   1/3     200   224 ..     1    24 []    28.5  2.1e-05
PF00096.16.fs   2/3     230   254 ..     1    24 []    29.7  3.8e-06
PF00096.16.ls   2/3     230   254 ..     1    24 []    31.7  2.4e-06
PF00096.16.fs   3/3     260   282 ..     1    24 []    27.7  1.2e-05
PF00096.16.ls   3/3     260   282 ..     1    24 []    29.7  9.6e-06

Alignments of top-scoring domains:
PF00096.16.fs: domain 1 of 3, from 200 to 224: score 26.5, E = 2.3e-05
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      ++C+f++C k+++ +s+Lk+H+rtH   
     on13133   200    HRCHFnGCRKVYTKSSHLKAHQRTH    224  

PF00096.16.ls: domain 1 of 3, from 200 to 224: score 28.5, E = 2.1e-05
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      ++C+f++C k+++ +s+Lk+H+rtH   
     on13133   200    HRCHFnGCRKVYTKSSHLKAHQRTH    224  

PF00096.16.fs: domain 2 of 3, from 230 to 254: score 29.7, E = 3.8e-06
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      y+C++++C  +F r+++L+rH r+H   
     on13133   230    YRCSWeGCEWRFARSDELTRHFRKH    254  

PF00096.16.ls: domain 2 of 3, from 230 to 254: score 31.7, E = 2.4e-06
                   *->ykCpf.dCgksFsrksnLkrHlrtH<-*
                      y+C++++C  +F r+++L+rH r+H   
     on13133   230    YRCSWeGCEWRFARSDELTRHFRKH    254  

PF00096.16.fs: domain 3 of 3, from 260 to 282: score 27.7, E = 1.2e-05
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ +C+++Fsr+++L  H+++H   
     on13133   260    FKCS-HCDRCFSRSDHLALHMKRH    282  

PF00096.16.ls: domain 3 of 3, from 260 to 282: score 29.7, E = 9.6e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      +kC+ +C+++Fsr+++L  H+++H   
     on13133   260    FKCS-HCDRCFSRSDHLALHMKRH    282  

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