Miyakogusa Predicted Gene

chr6.LjT34E09.90.nc
Related links:
Predicted Sequence Links:
Genome Sequence: LjT34E09
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7PFY5_VITVI 597 54.0 68.0 (tr|A7PFY5) Chromosome chr6 scaffold_15, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00017301001 PE=4 SV=1
TAIR_pep AT2G26920.1 437 45.0 59.2 | Symbols: | ubiquitin-associated (UBA)/TS-N domain-containing protein | chr2:11496726-11498666 FORWARD
Medicago IMGA|CR954185_53.5 775 64.0 74.5 UBA-like chr05_pseudomolecule_IMGAG_V2 31973328-31968437 E EGN_Mt071002 20080227
Soybean Glyma20g08920.1 919 75.7 81.8  
Lotus Consensus KMC020398A_C01 131 83.3 83.3 KMC020398A_c01
3' Unigene KMC020398A_C01 188 80.5 80.5 KMC020398A_c01
5' Unigene R_KMC000231A_C01 85.7 80.2 80.2 R_KMC000231A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr6.LjT34E09.90.nc length: 648 aa.
IPR000449 Ubiquitin-associated/Translation elongation factor EF1B, N-terminal
method AccNumber shortName E-value location
HMMPfam PF00627 UBA 1.7e-08 159-198
ProfileScan PS50030 UBA 10.113 158-198
IPR009060 UBA-like
superfamily SSF46934 UBA-like 0.0037 153-201
219-265
no_ID  
Gene3D 1.10.8.30 no description 0.00017 161-204
Seg seg seg NA 471-483
521-534
612-628
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr6.LjT34E09.90.nc 648 0.855 0.039 0.018 0.365 C 3
Wolf-PSORT
chr6.LjT34E09.90.nc	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr6.LjT34E09.90.nc Targeted 1.183 -1.741 -1.661 0.48% 4.585