Miyakogusa Predicted Gene

chr6.LjT02P05.30.nd
Related links:
Predicted Sequence Links:
Genome Sequence: LjT02P05
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A2Q5F8_MEDTR 708 63.8 71.8 (tr|A2Q5F8) Peptidase S26A, signal peptidase I; WD40-like OS=Medicago truncatula GN=MtrDRAFT_AC161399g55v2 PE=4 SV=1
TAIR_pep AT3G13300.2 477 45.9 60.5 | Symbols: VCS | VCS (VARICOSE); nucleotide binding | chr3:4304092-4309956 FORWARD
Medicago IMGA|AC161399_61.5 710 64.0 72.0 Peptidase S26A, signal peptidase I; WD40-like chr02_pseudomolecule_IMGAG_V2 7542576-7552440 E EGN_Mt071002 20080227
Soybean Glyma15g12890.1 752 66.4 75.0  
3' Unigene BP041617 617 100.0 100.0 MFBL007c01_f
A list of protein families, domains and functional sites (searches in InterPro)
chr6.LjT02P05.30.nd length: 594 aa.
IPR001680 WD-40 repeat
method AccNumber shortName E-value location
FPrintScan PR00320 GPROTEINBRPT 0.00046 22-36
133-147
HMMPfam PF00400 WD40 2.6e-05 9-35
107-146
HMMSmart SM00320 no description 0.021 1-35
106-146
ProfileScan PS50082 WD_REPEATS_2 9.907 15-44
113-155
ProfileScan PS50294 WD_REPEATS_REGION 9.678 113-155
IPR011046 WD40-like
superfamily SSF50978 WD40-repeat 9.8e-13 1-261
no_ID  
Gene3D 2.130.10.10 no description 1.5e-09 9-164
HMMPanther PTHR15598 AUTOANTIGEN 9.6e-63 7-335
Seg seg seg NA 408-437
476-489
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr6.LjT02P05.30.nd 594 0.010 0.104 0.922 0.202 S 2
Wolf-PSORT
chr6.LjT02P05.30.nd	cyto 7, nucl 4, chlo 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr6.LjT02P05.30.nd Not targeted -51.441 0 -12.265 76.97% -39.177