Miyakogusa Predicted Gene

chr6.CM0686.280.nd

Related links:

GeneModel
GBrowse(chr6.CM0686.280.nd)

Predicted Sequence Links:

Genome Sequence: CM0686

Full length sequence(157895 bp)
Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	A7QNT6_VITVI	956	80.3	86.3	(tr\|A7QNT6) Chromosome undetermined scaffold_134, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00002665001 PE=4 SV=1
TAIR_pep	AT5G04870.1	898	73.0	80.4	\| Symbols: AK1, ATCPK1, CPK1 \| CPK1 (calcium-dependent protein kinase isoform AK1); calmodulin-dependent protein kinase/ kinase \| chr5:1417016-1419878 REVERSE
Medicago	IMGA\|AC174313_29.4	1004	84.1	88.5	Protein kinase; Calcium-binding EF-hand chr01_pseudomolecule_IMGAG_V2 12653772-12658835 F EGN_Mt071002 20080227
Soybean	Glyma20g17020.2	1031	86.6	89.8
3' Unigene	BP053279	363	86.3	86.3	SPDL021a05_f

A list of protein families, domains and functional sites (searches in InterPro)

IPR000719	Protein kinase
chr6.CM0686.280.nd				length: 581 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0004672	protein kinase activity
Molecular Function	GO:0005524	ATP binding
Biological Process	GO:0006468	protein amino acid phosphorylation
BlastProDom	PD000001	CDP1_ARATH_Q06850;	2e-130	118-375
HMMPfam	PF00069	Pkinase	9.7e-103	118-376
ProfileScan	PS50011	PROTEIN_KINASE_DOM	46.817	118-376
ScanRegExp	PS00107	PROTEIN_KINASE_ATP	8e-5	124-151
IPR002048	Calcium-binding EF-hand
Molecular Function	GO:0005509	calcium ion binding
BlastProDom	PD000012	Q852N6_EEEEE_Q852N6;	1e-09	499-554 417-481
HMMPfam	PF00036	efhand	4.2e-08	423-451 459-487 495-523 529-557
HMMSmart	SM00054	no description	5.3e-06	423-451 459-487 495-523 529-557
ProfileScan	PS50222	EF_HAND_2	11.808	419-454 455-490 491-526 529-560
ScanRegExp	PS00018	EF_HAND_1	8e-5	432-444 468-480 504-516 538-550
IPR002290	Serine/threonine protein kinase
Molecular Function	GO:0004674	protein serine/threonine kinase activity
Molecular Function	GO:0005524	ATP binding
Biological Process	GO:0006468	protein amino acid phosphorylation
HMMSmart	SM00220	no description	1.6e-96	118-376
IPR008271	Serine/threonine protein kinase, active site
Molecular Function	GO:0004674	protein serine/threonine kinase activity
Biological Process	GO:0006468	protein amino acid phosphorylation
ScanRegExp	PS00108	PROTEIN_KINASE_ST	8e-5	238-250
IPR011009	Protein kinase-like
superfamily	SSF56112	Protein	6.6e-78	88-361
no_ID
Gene3D	1.10.238.10	no description	2.5e-20	489-554
Gene3D	1.10.510.10	no description	2.1e-58	201-455
Gene3D	3.30.200.20	no description	4.8e-23	112-198
HMMPanther	PTHR22982	CALCIUM/CALMODULIN-DEPENDENT	5.1e-285	166-558
HMMPanther	PTHR22982:SF13	CALCIUM-DEPENDENT	5.1e-285	166-558
Seg	seg	seg	NA	71-91 157-166
superfamily	SSF47473	EF-hand	4.4e-50	362-556

Putative transmembrane regions

	From	To
TM segments SOSUI	181	203
TM segments SOSUI	300	322

TargetP V1.0 Prediction Results

Name	Length	cTP	mTP	SP	other	Loc.	RC
chr6.CM0686.280.nd	581	0.596	0.096	0.042	0.316	C	4

Wolf-PSORT

chr6.CM0686.280.nd	chlo 6, cyto 3, mito 3, nucl 1, pero 1

PTS1 (Peroxisome targeting signal type 1)

entry_id	prediction	score	sppta	spptna	fp	profile
chr6.CM0686.280.nd	Twilight zone	-5.652	-2.871	-2.046	1.85%	-0.734