Miyakogusa Predicted Gene

chr6.CM0057.480.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0057
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7PGW2_VITVI 1100 59.9 72.1 (tr|A7PGW2) Chromosome chr17 scaffold_16, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00017712001 PE=4 SV=1
TAIR_pep AT1G48760.3 795 70.9 86.4 | Symbols: DELTA-ADR | DELTA-ADR (DELTA-ADAPTIN); clathrin binding | chr1:18040320-18042929 REVERSE
Medicago IMGA|AC135462_17.5 1429 73.7 82.8 Adaptin, N-terminal chr04_pseudomolecule_IMGAG_V2 37563919-37566879 E EGN_Mt071002 20080227
Soybean Glyma05g34740.1 1310 69.6 78.0  
3' Unigene BP053778 583 98.7 98.7 SPDL029a12_f
A list of protein families, domains and functional sites (searches in InterPro)
chr6.CM0057.480.nc length: 973 aa.
IPR002553 Adaptin, N-terminal
method AccNumber shortName E-value location
HMMPfam PF01602 Adaptin_N 7.9e-70 32-654
no_ID  
Gene3D 1.25.10.10 no description 8.8e-95 37-650
HMMPanther PTHR22781 DELTA 3.5e-241 9-547
612-834
HMMPanther PTHR22781:SF10 DELTA-ADAPTIN 3.5e-241 9-547
612-834
Seg seg seg NA 745-766
875-892
937-952
superfamily SSF48371 ARM 2.4e-72 14-656
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr6.CM0057.480.nc 973 0.233 0.082 0.123 0.604 _ 4
Wolf-PSORT
chr6.CM0057.480.nc	nucl 3, cyto 3, vacu 3, cyto_nucl 3, chlo 2, E.R. 2, nucl_plas 2, cyto_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr6.CM0057.480.nc Not targeted -38.710 -3.526 -24.698 50.36% -10.486