Miyakogusa Predicted Gene

chr5.LjT42D02.30.nd
Related links:
Predicted Sequence Links:
Genome Sequence: LjT42D02
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q9FMM3_ARATH 625 43.0 58.1 (tr|Q9FMM3) Gb|AAC80623.1 OS=Arabidopsis thaliana GN=At5g42950 PE=4 SV=1
TAIR_pep AT5G42950.1 625 43.0 58.1 | Symbols: | GYF domain-containing protein | chr5:17241664-17248272 FORWARD
Soybean Glyma17g36840.1 1065 72.4 79.3  
Lotus Consensus KMC000785A_C01 1289 99.4 99.4 KMC000785A_c01
3' Unigene KMC000785A_C01 963 99.2 99.2 KMC000785A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr5.LjT42D02.30.nd length: 1728 aa.
IPR003169 GYF
method AccNumber shortName E-value location
HMMPfam PF02213 GYF 3.7e-10 528-583
HMMSmart SM00444 no description 2.4e-08 528-583
ProfileScan PS50829 GYF 13.575 527-578
no_ID  
Coil coil coiled-coil NA 875-896
1217-1238
1283-1304
HMMPanther PTHR14445 GRB10 1.9e-08 531-564
HMMPanther PTHR14445:SF5 gb 1.9e-08 531-564
Seg seg seg NA 97-112
272-288
670-689
843-908
1089-1111
1342-1361
1414-1421
1471-1490
1693-1703
superfamily SSF55277 GYF 9.2e-11 527-576
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr5.LjT42D02.30.nd 1728 0.437 0.151 0.054 0.256 C 5
Wolf-PSORT
chr5.LjT42D02.30.nd	nucl 10, cysk 2, cyto 1, plas 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr5.LjT42D02.30.nd Not targeted -62.102 -2.851 -11.152 90.72% -48.099