Miyakogusa Predicted Gene

chr5.LjT39E05.30.nd
Related links:
Predicted Sequence Links:
Genome Sequence: LjT39E05
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7P2Q5_VITVI 447 82.4 87.9 (tr|A7P2Q5) Chromosome chr1 scaffold_5, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00030145001 PE=4 SV=1
TAIR_pep AT5G05010.2 380 73.0 81.5 | Symbols: | clathrin adaptor complexes medium subunit-related | chr5:1477138-1479873 FORWARD
Medicago IMGA|AC170856_13.4 447 82.8 88.6 Longin-like chr02_pseudomolecule_IMGAG_V2 22185645-22190884 F EGN_Mt071002 20080227
Soybean Glyma20g24550.1 476 88.3 90.8  
5' Unigene AV422567 333 99.4 99.4 MWM015g01_r
A list of protein families, domains and functional sites (searches in InterPro)
chr5.LjT39E05.30.nd length: 323 aa.
IPR011012 Longin-like
method AccNumber shortName E-value location
Biological Process GO:0006810 transport    
superfamily SSF64356 SNARE-like 4.9e-30 29-169
no_ID  
Gene3D 3.30.450.60 no description 1.1e-21 29-168
HMMPanther PTHR10121 COATOMER 1.5e-137 29-310
Seg seg seg NA 18-30
226-244
304-317
Putative transmembrane regions
  From To
TM segments
SOSUI		 8 30
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr5.LjT39E05.30.nd 323 0.010 0.022 0.969 0.052 S 1
Wolf-PSORT
chr5.LjT39E05.30.nd	chlo 4, cyto 3, nucl 2, extr 2, cyto_E.R. 2, cyto_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr5.LjT39E05.30.nd Not targeted -44.004 -0.246 -9.994 62.40% -33.764