Miyakogusa Predicted Gene

chr5.LjT15N12.20.nc
Related links:
Predicted Sequence Links:
Genome Sequence: LjT15N12
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL B5U8K2_LOTJA 437 77.8 78.2 (tr|B5U8K2) Legumin storage protein 3 OS=Lotus japonicus GN=llp3 PE=3 SV=1
TAIR_pep AT5G44120.3 164 38.2 52.0 | Symbols: ATCRA1, CRU1, CRA1 | CRA1 (CRUCIFERINA); nutrient reservoir | chr5:17773687-17775473 REVERSE
Medicago IMGA|AC158374_17.5 281 55.9 65.5 Cupin region chr01_pseudomolecule_IMGAG_V2 16361337-16363573 F EGN_Mt071002 20080227
Soybean Glyma10g04280.1 264 53.7 67.7  
Lotus Consensus KMC014845A_C01 46.1 96.3 96.3 KMC014845A_c01
3' Unigene BP055418 46.1 93.5 93.5 SPDL054e12_f
A list of protein families, domains and functional sites (searches in InterPro)
chr5.LjT15N12.20.nc length: 582 aa.
IPR006044 11-S plant seed storage protein
method AccNumber shortName E-value location
Molecular Function GO:0045735 nutrient reservoir activity    
FPrintScan PR00439 11SGLOBULIN 3.1e-61 405-422
428-448
450-470
474-490
492-507
510-528
529-546
ScanRegExp PS00305 11S_SEED_STORAGE 8e-5 393-415
IPR006045 Cupin 1
Molecular Function GO:0045735 nutrient reservoir activity    
HMMPfam PF00190 Cupin_1 1.6e-52 37-196
406-552
IPR011051 Cupin, RmlC-type
superfamily SSF51182 RmlC-like 1e-87 2-560
no_ID  
Gene3D 2.60.120.10 no description 2e-54 25-408
409-566
ProfileScan PS50849 CUPIN 9.618 91-160
450-509
Seg seg seg NA 5-19
117-133
144-155
218-234
285-359
364-392
464-477
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr5.LjT15N12.20.nc 582 0.035 0.075 0.691 0.038 S 2
Wolf-PSORT
chr5.LjT15N12.20.nc	vacu 9, golg 2, nucl 1, plas 1, E.R. 1, nucl_plas 1, E.R._plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr5.LjT15N12.20.nc Not targeted -40.451 -0.007 -4.991 54.40% -35.453