Miyakogusa Predicted Gene

chr5.LjT02I10.320.nd

Related links:

GeneModel
GBrowse(chr5.LjT02I10.320.nd)

Predicted Sequence Links:

Genome Sequence: LjT02I10

Full length sequence(120564 bp)
Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	A7QBW3_VITVI	343	49.4	56.4	(tr\|A7QBW3) Chromosome chr1 scaffold_75, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00035130001 PE=4 SV=1
TAIR_pep	AT2G02070.1	330	76.1	82.2	\| Symbols: ATIDD5 \| ATIDD5 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 5); nucleic acid binding / transcription factor/ zinc ion binding \| chr2:505522-509153 FORWARD
Medicago	IMGA\|AC140915_53.5	306	82.8	90.8	Zinc finger, C2H2-type chr08_pseudomolecule_IMGAG_V2 4949635-4946698 E EGN_Mt071002 20080227
Soybean	Glyma20g24370.1	402	68.1	71.8
3' Unigene	AV772572	115	86.5	86.5	MPD038a11_f

A list of protein families, domains and functional sites (searches in InterPro)

IPR007087	Zinc finger, C2H2-type
chr5.LjT02I10.320.nd				length: 465 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003676	nucleic acid binding
Cellular Component	GO:0005622	intracellular
Molecular Function	GO:0008270	zinc ion binding
HMMPfam	PF00096	zf-C2H2	0.0054	75-97 151-173
HMMSmart	SM00355	no description	1.5e+02	75-97 116-146 151-171
ProfileScan	PS50157	ZINC_FINGER_C2H2_2	10.990	75-97
ScanRegExp	PS00028	ZINC_FINGER_C2H2_1	NA	77-97
no_ID
HMMPanther	PTHR10593	SERINE/THREONINE-PROTEIN	9.1e-11	114-192
HMMPanther	PTHR10593:SF10	UNCHARACTERIZED	9.1e-11	114-192
Seg	seg	seg	NA	2-9 30-44 149-159 257-266 308-318 332-373 396-417
superfamily	SSF57667	C2H2	1.9e-06	70-106 127-180

Wolf-PSORT

chr5.LjT02I10.320.nd	nucl 13.5, cyto_nucl 7.5