Miyakogusa Predicted Gene

chr5.CM1439.180.nd
Related links:
Predicted Sequence Links:
Genome Sequence: CM1439
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q9FSZ7_CICAR 286 65.5 68.5 (tr|Q9FSZ7) Putative uncharacterized protein (Fragment) OS=Cicer arietinum PE=2 SV=1
TAIR_pep AT3G19910.1 252 50.4 59.5 | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr3:6926503-6929330 FORWARD
Medicago IMGA|AC157490_22.4 355 66.2 70.2 Zinc finger, RING-type chr01_pseudomolecule_IMGAG_V2 28384951-28391271 F EGN_Mt071002 20080227
Soybean Glyma10g43120.1 369 69.5 72.7  
Lotus Consensus KMC003217A_C01 335 95.4 95.4 KMC003217A_c01
3' Unigene KMC003217A_C01 389 92.7 92.7 KMC003217A_c01
5' Unigene R_KMC000843A_C01 216 100.0 100.0 R_KMC000843A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr5.CM1439.180.nd length: 295 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF00097 zf-C3HC4 3e-07 244-284
HMMSmart SM00184 no description 7.5e-05 244-284
ProfileScan PS50089 ZF_RING_2 11.707 244-285
no_ID  
Gene3D 3.30.40.10 no description 1.9e-12 237-290
HMMPanther PTHR14155 RING 2.7e-20 193-284
HMMPanther PTHR14155:SF2 RING 2.7e-20 193-284
Seg seg seg NA 6-24
85-121
148-170
superfamily SSF57850 RING/U-box 1.7e-16 221-288
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr5.CM1439.180.nd 295 0.508 0.057 0.019 0.826 _ 4
Wolf-PSORT
chr5.CM1439.180.nd	nucl 10, cyto 2, chlo 1, vacu 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr5.CM1439.180.nd Targeted 4.190 0 -4.965 0.23% 9.155