Miyakogusa Predicted Gene
- chr5.CM0345.750.nc
- Related links:
- Predicted Sequence Links:
- Genome Sequence: CM0345
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
Q9FY61_ARATH |
1810 |
74.0 |
84.3 |
(tr|Q9FY61) Putative uncharacterized protein T5K6_30 OS=Arabidopsis thaliana GN=T5K6_30 PE=4 SV=1 |
|---|
| TAIR_pep |
AT5G11040.1 |
1810 |
74.0 |
84.3 |
| Symbols: | similar to hypothetical protein OsI_015984 [Oryza sativa (indica cultivar-group)] (GB:EAY94751.1); similar to H0311C03.11 [Oryza sativa (indica cultivar-group)] (GB:CAH67557.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44298.1); contains InterPro domain Transport protein Trs120 (InterPro:IPR013935) | chr5:3495333-3500611 FORWARD |
|---|
| Soybean |
Glyma17g33020.1 |
1436 |
88.5 |
93.0 |
|
|---|
| 3' Unigene |
BP064366 |
603 |
99.4 |
99.4 |
GENLf038h03 |
|---|
- A list of protein families, domains and functional sites (searches in InterPro)
| chr5.CM0345.750.nc |
length: 1200 aa. |
| IPR013935 |
Transport protein Trs120 |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF08626 |
Trs120 |
4.5e-81 |
1-195 |
| no_ID |
|
| HMMPanther |
PTHR21512 |
FAMILY |
0 |
63-1080 |
| HMMPanther |
PTHR21512:SF5 |
gb |
0 |
63-1080 |
| Seg |
seg |
seg |
NA |
975-987 |
| superfamily |
SSF48452 |
TPR-like |
0.0085 |
212-504 |
- TargetP V1.0 Prediction Results
| Name |
Length |
cTP |
mTP |
SP |
other |
Loc. |
RC |
| chr5.CM0345.750.nc |
1200 |
0.074 |
0.067 |
0.175 |
0.815 |
_ |
2
|
- Wolf-PSORT
chr5.CM0345.750.nc nucl 4, plas 3, cyto_nucl 3, E.R. 2.5, E.R._vacu 2.5, cyto_plas 2.5
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| chr5.CM0345.750.nc |
Not targeted |
-36.107 |
-1.388 |
-5.290 |
44.26% |
-29.429
|