Miyakogusa Predicted Gene

chr5.CM0345.1450.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0345
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7P5K3_VITVI 284 63.7 72.2 (tr|A7P5K3) Chromosome chr4 scaffold_6, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00032567001 PE=4 SV=1
TAIR_pep AT5G11350.1 239 71.4 84.4 | Symbols: | endonuclease/exonuclease/phosphatase family protein | chr5:3621584-3625413 FORWARD
Medicago IMGA|AC144617_22.5 679 57.3 67.8 Endonuclease/exonuclease/phosphatase chr01_pseudomolecule_IMGAG_V2 3434673-3444796 E EGN_Mt071002 20080227
Soybean Glyma14g15270.1 697 60.4 71.5  
Lotus Consensus KMC000792A_C01 379 99.0 99.0 KMC000792A_c01
3' Unigene KMC000792A_C01 1076 99.5 99.5 KMC000792A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr5.CM0345.1450.nc length: 617 aa.
IPR005135 Endonuclease/exonuclease/phosphatase
method AccNumber shortName E-value location
HMMPfam PF03372 Exo_endo_phos 8.6e-08 8-222
no_ID  
HMMPanther PTHR12121 CARBON 2.7e-113 1-132
521-611
HMMPanther PTHR12121:SF9 CARBON 2.7e-113 1-132
521-611
Seg seg seg NA 299-312
343-355
460-471
superfamily SSF56219 DNase 3.9e-17 9-607
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr5.CM0345.1450.nc 617 0.040 0.302 0.063 0.649 _ 4
Wolf-PSORT
chr5.CM0345.1450.nc	nucl 8, chlo 4, nucl_plas 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr5.CM0345.1450.nc Not targeted -20.428 0 -4.679 13.53% -15.749