Miyakogusa Predicted Gene

chr5.CM0328.590.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0328
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A5AKH2_VITVI 981 70.6 80.9 (tr|A5AKH2) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040575 PE=4 SV=1
TAIR_pep AT2G01210.1 899 63.7 76.4 | Symbols: | leucine-rich repeat transmembrane protein kinase, putative | chr2:119508-121733 REVERSE
Medicago IMGA|CU151875_2.3 529 42.0 57.3 Protein kinase chr07_pseudomolecule_IMGAG_V2 13967948-13972545 E EGN_Mt071002 20080227
Soybean Glyma20g25570.1 1070 78.8 84.6  
Lotus Consensus KMC008186A_C01 791 99.8 99.8 KMC008186A_c01
3' Unigene KMC008186A_C01 1066 99.5 99.5 KMC008186A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr5.CM0328.590.nc length: 713 aa.
IPR000719 Protein kinase
method AccNumber shortName E-value location
Molecular Function GO:0004672 protein kinase activity    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006468 protein amino acid phosphorylation    
BlastProDom PD000001 Q9C9N5_ARATH_Q9C9N5; 8e-74 414-708
HMMPfam PF00069 Pkinase 7.3e-26 447-633
ProfileScan PS50011 PROTEIN_KINASE_DOM 31.142 408-708
IPR001611 Leucine-rich repeat
Molecular Function GO:0005515 protein binding    
FPrintScan PR00019 LEURICHRPT 1.2e-05 140-153
186-199
HMMPfam PF00560 LRR_1 0.0019 91-114
115-137
139-161
163-185
188-210
IPR002290 Serine/threonine protein kinase
Molecular Function GO:0004674 protein serine/threonine kinase activity    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006468 protein amino acid phosphorylation    
HMMSmart SM00220 no description 1e-12 413-709
IPR003591 Leucine-rich repeat, typical subtype
HMMSmart SM00369 no description 6.1 89-113
137-161
186-210
IPR008271 Serine/threonine protein kinase, active site
Molecular Function GO:0004674 protein serine/threonine kinase activity    
Biological Process GO:0006468 protein amino acid phosphorylation    
ScanRegExp PS00108 PROTEIN_KINASE_ST 8e-5 532-544
IPR011009 Protein kinase-like
superfamily SSF56112 Protein 1e-61 376-705
IPR013210 Leucine rich repeat, N-terminal
HMMPfam PF08263 LRRNT_2 5.5e-15 24-64
no_ID  
Gene3D 1.10.510.10 no description 1.2e-40 486-708
Gene3D 3.30.200.20 no description 2.1e-12 397-485
Gene3D 3.80.10.10 no description 1.7e-61 21-281
HMMPanther PTHR23258 SERINE-THREONINE 1.5e-210 31-282
332-345
362-369
390-566
590-611
HMMPanther PTHR23258:SF470RECEPTOR-LIKE PROTEIN 1.5e-210 31-282
332-345
362-369
390-566
590-611
ProfileScan PS50502 LRR_PS 15.356 122-194
195-272
Seg seg seg NA 2-20
286-296
326-341
362-370
667-676
superfamily SSF52058 L 2e-53 21-281
Putative transmembrane regions
  From To
TM segments
SOSUI		 2 24
321 343
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr5.CM0328.590.nc 713 0.003 0.031 0.973 0.046 S 1
Wolf-PSORT
chr5.CM0328.590.nc	plas 8.5, golg_plas 5.5, vacu 3, golg 1.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr5.CM0328.590.nc Not targeted -21.480 -0.536 -2.455 15.03% -18.488