Miyakogusa Predicted Gene

chr5.CM0311.120.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0311
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7QBW4_VITVI 353 45.2 51.7 (tr|A7QBW4) Chromosome chr1 scaffold_75, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00035131001 PE=4 SV=1
TAIR_pep AT2G02070.1 318 76.2 80.7 | Symbols: ATIDD5 | ATIDD5 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 5); nucleic acid binding / transcription factor/ zinc ion binding | chr2:505522-509153 FORWARD
Medicago IMGA|AC140915_53.5 305 78.2 86.8 Zinc finger, C2H2-type chr08_pseudomolecule_IMGAG_V2 4949635-4946698 E EGN_Mt071002 20080227
Soybean Glyma20g32480.2 489 52.5 57.8  
Lotus Consensus KMC004634A_C01 620 99.4 99.4 KMC004634A_c01
3' Unigene KMC004634A_C01 1070 99.6 99.6 KMC004634A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr5.CM0311.120.nc length: 573 aa.
IPR007087 Zinc finger, C2H2-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF00096 zf-C2H2 0.0036 72-94
148-170
HMMSmart SM00355 no description 1.4e+02 72-94
113-143
148-168
ProfileScan PS50157 ZINC_FINGER_C2H2_2 10.990 72-94
ScanRegExp PS00028 ZINC_FINGER_C2H2_1 NA 74-94
no_ID  
HMMPanther PTHR11389 ZINC 1.7e-11 72-197
Seg seg seg NA 2-9
28-39
145-156
239-259
324-345
362-367
377-390
413-426
433-448
491-502
superfamily SSF57667 C2H2 2.8e-06 67-103
124-177
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr5.CM0311.120.nc 573 0.926 0.021 0.011 0.237 C 2
Wolf-PSORT
chr5.CM0311.120.nc	nucl 13.5, cyto_nucl 7.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr5.CM0311.120.nc Not targeted -37.331 -0.378 -5.362 47.13% -31.591