Miyakogusa Predicted Gene

chr5.CM0299.430.nd
Related links:
Predicted Sequence Links:
Genome Sequence: CM0299
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A2Q340_MEDTR 615 85.3 90.9 (tr|A2Q340) Acyl-coA-binding protein, ACBP; Serine/threonine protein phosphatase, BSU1 OS=Medicago truncatula GN=MtrDRAFT_AC154391g25v2 PE=4 SV=1
TAIR_pep AT3G05420.2 525 70.8 82.3 | Symbols: ACBP4 | ACBP4 (ACYL-COA BINDING PROTEIN 4); acyl-CoA binding | chr3:1561886-1567053 FORWARD
Medicago IMGA|AC154391_25.5 615 85.3 90.9 Acyl-coA-binding protein, ACBP; Serine/threonine protein phosphatase, BSU1 chr07_pseudomolecule_IMGAG_V2 31207172-31217251 E EGN_Mt071002 20080227
Soybean Glyma20g37940.1 615 87.6 92.9  
Lotus Consensus KMC000151A_C01 620 98.5 98.5 KMC000151A_c01
3' Unigene KMC000151A_C01 1033 99.6 99.6 KMC000151A_c01
5' Unigene AV410859 174 100.0 100.0 MWL079h09_r
A list of protein families, domains and functional sites (searches in InterPro)
chr5.CM0299.430.nd length: 683 aa.
IPR000582 Acyl-coA-binding protein, ACBP
method AccNumber shortName E-value location
Molecular Function GO:0000062 acyl-CoA binding    
BlastProDom PD351532 Q9MA55_ARATH_Q9MA55; 5e-23 34-105
FPrintScan PR00689 ACOABINDINGP 1e-05 23-38
40-58
63-78
84-101
HMMPfam PF00887 ACBP 2e-11 22-102
IPR011043 Galactose oxidase, central
superfamily SSF50965 Galactose 2.8e-25 166-353
IPR011498 Kelch
HMMPfam PF07646 Kelch_2 8.2e-06 185-230
245-291
296-342
no_ID  
Coil coil coiled-coil NA 629-664
Gene3D 1.20.80.10 no description 6e-21 16-107
Gene3D 2.120.10.80 no description 3.5e-23 166-353
HMMPanther PTHR23244 KELCH 1.1e-72 157-342
HMMPanther PTHR23244:SF29 RANGAP1-INTERACTING 1.1e-72 157-342
Seg seg seg NA 364-374
569-582
639-650
superfamily SSF47027 Acyl-CoA 3e-20 13-105
Putative transmembrane regions
  From To
TM segments
SOSUI		 357 378
385 407
429 451
454 476
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr5.CM0299.430.nd 683 0.071 0.253 0.026 0.389 _ 5
Wolf-PSORT
chr5.CM0299.430.nd	plas 7, E.R. 2, nucl 1, mito 1, vacu 1, pero 1, cysk 1, cysk_nucl 1, cyto_E.R. 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr5.CM0299.430.nd Not targeted -54.073 -0.348 -9.796 81.18% -43.929