Miyakogusa Predicted Gene

chr5.CM0260.430.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0260
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7Q420_VITVI 739 58.9 67.9 (tr|A7Q420) Chromosome chr13 scaffold_48, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00029506001 PE=4 SV=1
TAIR_pep AT1G28060.1 632 48.9 61.1 | Symbols: | small nuclear ribonucleoprotein family protein / snRNP family protein | chr1:9779154-9782473 FORWARD
Medicago IMGA|CT571261_24.5 290 67.7 74.9 U4/U6 small nuclear ribonucleoprotein Prp3 , related chr05_pseudomolecule_IMGAG_V2 16095622-16094953 E EGN_Mt071002 20080227
Soybean Glyma01g43990.1 866 60.1 64.8  
A list of protein families, domains and functional sites (searches in InterPro)
chr5.CM0260.430.nc length: 806 aa.
IPR013881 Pre-mRNA-splicing factor 3
method AccNumber shortName E-value location
HMMPfam PF08572 PRP3 1.4e-172 418-799
no_ID  
Coil coil coiled-coil NA 231-252
565-588
HMMPanther PTHR14212 U4/U6-ASSOCIATED 1e-119 4-806
Seg seg seg NA 2-48
95-127
180-193
208-221
232-249
274-288
295-313
464-483
548-580
736-749
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr5.CM0260.430.nc 806 0.115 0.253 0.062 0.850 _ 3
Wolf-PSORT
chr5.CM0260.430.nc	nucl 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr5.CM0260.430.nc Not targeted -47.277 -4.572 -13.320 69.25% -29.386