| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| TrEMBL | A5BM08_VITVI | 372 | 47.6 | 59.9 | (tr|A5BM08) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006312 PE=4 SV=1 |
| TAIR_pep | AT3G19510.1 | 313 | 70.3 | 85.4 | | Symbols: HAT3.1 | homeobox protein (HAT 3.1) | chr3:6763211-6766055 REVERSE |
| Medicago | IMGA|AC123547_34.5 | 212 | 47.6 | 62.5 | Zinc finger, FYVE/PHD-type; Homeodomain-related chr02_pseudomolecule_IMGAG_V2 10206326-10210357 H EGN_Mt071002 20080227 |
| Soybean | Glyma10g40640.2 | 809 | 64.9 | 73.5 | |
| 3' Unigene | BP085333 | 841 | 99.5 | 99.5 | MRL033b02_f |
| chr5.CM0200.950.nc | length: 966 aa. | |||
| IPR001356 | Homeobox | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Molecular Function | GO:0003700 | transcription factor activity | ||
| Cellular Component | GO:0005634 | nucleus | ||
| Biological Process | GO:0006355 | regulation of transcription, DNA-dependent | ||
| Molecular Function | GO:0043565 | sequence-specific DNA binding | ||
| BlastProDom | PD000010 | O24569_MAIZE_O24569; | 1e-08 | 828-872 |
| HMMPfam | PF00046 | Homeobox | 6.2e-07 | 821-877 |
| HMMSmart | SM00389 | no description | 8.6e-15 | 820-882 |
| ProfileScan | PS50071 | HOMEOBOX_2 | 14.171 | 818-878 |
| IPR001965 | Zinc finger, PHD-type | |||
| Molecular Function | GO:0005515 | protein binding | ||
| Biological Process | GO:0006355 | regulation of transcription, DNA-dependent | ||
| Molecular Function | GO:0008270 | zinc ion binding | ||
| HMMPfam | PF00628 | PHD | 2.3e-14 | 491-546 |
| HMMSmart | SM00249 | no description | 1.9e-10 | 491-544 |
| ProfileScan | PS50016 | ZF_PHD_2 | 11.172 | 489-546 |
| ScanRegExp | PS01359 | ZF_PHD_1 | 8e-5 | 492-543 |
| IPR009057 | Homeodomain-like | |||
| superfamily | SSF46689 | Homeodomain-like | 2.5e-14 | 811-889 |
| IPR011011 | Zinc finger, FYVE/PHD-type | |||
| Molecular Function | GO:0008270 | zinc ion binding | ||
| superfamily | SSF57903 | FYVE/PHD | 5e-11 | 483-562 |
| no_ID | ||||
| Gene3D | 1.10.10.60 | no description | 1.2e-09 | 787-883 |
| Gene3D | 3.30.40.10 | no description | 7.2e-06 | 465-545 |
| HMMPanther | PTHR19418 | HOMEOBOX | 1.8e-07 | 832-881 |
| HMMPanther | PTHR19418:SF83 | PAIRED-LIKE | 1.8e-07 | 832-881 |
| Seg | seg | seg | NA | 48-65 382-398 588-595 602-623 659-673 |
| Name | Length | cTP | mTP | SP | other | Loc. | RC |
|---|---|---|---|---|---|---|---|
| chr5.CM0200.950.nc | 966 | 0.435 | 0.031 | 0.021 | 0.802 | _ | 4 |
chr5.CM0200.950.nc nucl 14
| entry_id | prediction | score | sppta | spptna | fp | profile |
|---|---|---|---|---|---|---|
| chr5.CM0200.950.nc | Not targeted | -28.984 | 0 | -1.389 | 28.39% | -27.594 |