Miyakogusa Predicted Gene
- chr5.CM0200.210.nd
- Related links:
- Predicted Sequence Links:
- Genome Sequence: CM0200
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
B6EUA9_ARATH |
142 |
51.1 |
74.8 |
(tr|B6EUA9) Putative uncharacterized protein At1g44910.1 OS=Arabidopsis thaliana GN=At1g44910 PE=4 SV=1 |
|---|
| TAIR_pep |
AT1G44910.1 |
142 |
51.1 |
74.8 |
| Symbols: | protein binding | chr1:16978370-16985258 FORWARD |
|---|
| Soybean |
Glyma10g40180.2 |
196 |
71.2 |
79.9 |
|
|---|
- A list of protein families, domains and functional sites (searches in InterPro)
| chr5.CM0200.210.nd |
length: 139 aa. |
| IPR002713 |
FF |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF01846 |
FF |
7.6e-05 |
70-120 |
| HMMSmart |
SM00441 |
no description |
0.00031 |
68-123 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
50-71
114-138 |
| HMMPanther |
PTHR11864 |
HUNTINGTIN-INTERACTING |
4.1e-25 |
1-139 |
| Seg |
seg |
seg |
NA |
55-70 |
| superfamily |
SSF81698 |
FF |
3e-12 |
57-126 |
- TargetP V1.0 Prediction Results
| Name |
Length |
cTP |
mTP |
SP |
other |
Loc. |
RC |
| chr5.CM0200.210.nd |
139 |
0.027 |
0.111 |
0.341 |
0.687 |
_ |
4
|
- Wolf-PSORT
chr5.CM0200.210.nd nucl 11, cyto 1, mito 1, pero 1, cyto_pero 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| chr5.CM0200.210.nd |
Not targeted |
-51.720 |
-1.089 |
-1.597 |
77.44% |
-49.035
|