Miyakogusa Predicted Gene

chr5.CM0200.1570.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0200
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7P9N3_VITVI 820 67.2 73.5 (tr|A7P9N3) Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00036636001 PE=4 SV=1
TAIR_pep AT3G19420.1 803 67.4 75.8 | Symbols: | phosphoric monoester hydrolase | chr3:6731830-6735360 FORWARD
Medicago IMGA|CT573077_20.4 699 59.4 70.7 Tyrosine specific protein phosphatase and dual specificity protein phosphatase; C2 calcium/lipid-binding region, CaLB chr05_pseudomolecule_IMGAG_V2 5820477-5815487 E EGN_Mt071002 20080227
Soybean Glyma20g26280.1 992 80.6 84.3  
Lotus Consensus KMC005047A_C01 831 100.0 100.0 KMC005047A_c01
3' Unigene KMC005047A_C01 1178 99.7 99.7 KMC005047A_c01
5' Unigene AV409855 783 100.0 100.0 MWL063g09_r
A list of protein families, domains and functional sites (searches in InterPro)
chr5.CM0200.1570.nc length: 617 aa.
IPR000387 Tyrosine specific protein phosphatase and dual specificity protein phosphatase
method AccNumber shortName E-value location
Molecular Function GO:0004721 phosphoprotein phosphatase activity    
Biological Process GO:0006470 protein amino acid dephosphorylation    
ProfileScan PS50056 TYR_PHOSPHATASE_2 10.308 240-300
ScanRegExp PS00383 TYR_PHOSPHATASE_1 8e-5 263-275
IPR008973 C2 calcium/lipid-binding region, CaLB
superfamily SSF49562 C2 5.6e-13 338-461
no_ID  
Gene3D 3.90.190.10 no description 9.9e-64 140-323
HMMPanther PTHR12305 PHOSPHATASE 2.4e-298 150-614
HMMPanther PTHR12305:SF8 PTEN-RELATED, 2.4e-298 150-614
Seg seg seg NA 64-76
178-187
478-497
superfamily SSF52799 (Phosphotyrosine 3.3e-30 138-321
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr5.CM0200.1570.nc 617 0.629 0.011 0.009 0.671 _ 5
Wolf-PSORT
chr5.CM0200.1570.nc	nucl 12, cyto 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr5.CM0200.1570.nc Not targeted -64.612 -0.002 -23.653 92.77% -40.958