Miyakogusa Predicted Gene
- chr5.CM0200.1250.nc
- Related links:
- Predicted Sequence Links:
- Genome Sequence: CM0200
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
A7P9P6_VITVI |
354 |
71.5 |
79.7 |
(tr|A7P9P6) Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00036650001 PE=4 SV=1 |
|---|
| TAIR_pep |
AT4G34215.2 |
322 |
66.0 |
75.6 |
| Symbols: | Encodes a member of the SGNH-hydrolase superfamily of enzymes. The enzymes of the SGNH-hydrolase superfamily facilitate the hydrolysis of ester, thioester and amide bonds in a range of substrates including complex polysaccharides, lysophospholipids, acyl-CoA esters and other compounds. | chr4:16380207-16381196 REVERSE |
|---|
| Medicago |
IMGA|CU457801_18.3 |
235 |
54.5 |
68.4 |
Chain A, X-Ray Structure Of Protein From chr03_pseudomolecule_IMGAG_V2 30039305-30036891 H EGN_Mt071002 20080227 |
|---|
| Soybean |
Glyma20g26520.1 |
400 |
76.7 |
84.9 |
|
|---|
| Lotus Consensus |
KMC021196A_C01 |
1516 |
100.0 |
100.0 |
KMC021196A_c01 |
|---|
| 3' Unigene |
KMC021196A_C01 |
1136 |
100.0 |
100.0 |
KMC021196A_c01 |
|---|
- A list of protein families, domains and functional sites (searches in InterPro)
| chr5.CM0200.1250.nc |
length: 257 aa. |
| IPR005181 |
Protein of unknown function DUF303, acetylesterase putative |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF03629 |
DUF303 |
6.3e-29 |
89-185 |
| IPR013830 |
Esterase, SGNH hydrolase-type |
| superfamily |
SSF52266 |
SGHN |
5.9e-05 |
149-255 |
- TargetP V1.0 Prediction Results
| Name |
Length |
cTP |
mTP |
SP |
other |
Loc. |
RC |
| chr5.CM0200.1250.nc |
257 |
0.452 |
0.050 |
0.024 |
0.847 |
_ |
4
|
- Wolf-PSORT
chr5.CM0200.1250.nc cyto 10, nucl 1, mito 1, plas 1, pero 1, nucl_plas 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| chr5.CM0200.1250.nc |
Not targeted |
-60.068 |
-4.784 |
-12.253 |
88.75% |
-43.031
|