Miyakogusa Predicted Gene

chr5.CM0052.230.nd
Related links:
Predicted Sequence Links:
Genome Sequence: CM0052
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7Q790_VITVI 783 85.8 91.4 (tr|A7Q790) Chromosome chr18 scaffold_59, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00031740001 PE=4 SV=1
TAIR_pep AT1G43190.2 741 81.9 89.1 | Symbols: | polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative | chr1:16277872-16280625 REVERSE
Medicago IMGA|AC150978_38.4 810 88.9 94.1 RNA-binding region RNP-1 (RNA recognition motif) chr01_pseudomolecule_IMGAG_V2 26967108-26973536 E EGN_Mt071002 20080227
Soybean Glyma20g30820.1 830 91.6 94.8  
Lotus Consensus KMC008264A_C01 660 99.2 99.2 KMC008264A_c01
3' Unigene KMC008264A_C01 1035 99.5 99.5 KMC008264A_c01
5' Unigene AV417330 662 100.0 100.0 MWM142f02_r
A list of protein families, domains and functional sites (searches in InterPro)
chr5.CM0052.230.nd length: 441 aa.
IPR000504 RNA-binding region RNP-1 (RNA recognition motif)
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 2e-09 8-75
256-323
366-433
HMMSmart SM00360 no description 9.1e-11 7-76
101-170
255-324
365-434
ProfileScan PS50102 RRM 12.168 6-80
254-328
364-438
IPR006536 HnRNP-L/PTB/hephaestus splicing factor
Molecular Function GO:0003723 RNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006397 mRNA processing    
HMMTigr TIGR01649 hnRNP-L_PTB: 2.5e-116 4-440
no_ID  
Gene3D 3.30.70.330 no description 2.6e-27 3-89
93-200
251-342
353-440
HMMPanther PTHR11546 HETEROGENEOUS 2.9e-174 23-441
HMMPanther PTHR11546:SF4 POLYPYRIMIDINE 2.9e-174 23-441
superfamily SSF54928 RNA-binding 2.5e-11 251-328
354-437
2-90
97-208
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr5.CM0052.230.nd 441 0.094 0.069 0.084 0.917 _ 1
Wolf-PSORT
chr5.CM0052.230.nd	cyto 6, nucl 4, cysk 2, chlo 1, plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr5.CM0052.230.nd Not targeted -21.070 -4.730 -1.830 14.43% -14.510