Miyakogusa Predicted Gene

chr5.CM0040.770.nc

Related links:

GeneModel
GBrowse(chr5.CM0040.770.nc)

Predicted Sequence Links:

Genome Sequence: CM0040

Full length sequence(792554 bp)
Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	A7P536_VITVI	813	76.6	86.3	(tr\|A7P536) Chromosome chr4 scaffold_6, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00032386001 PE=3 SV=1
TAIR_pep	AT4G31180.2	724	66.1	80.0	\| Symbols: \| aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative \| chr4:15156702-15159368 FORWARD
Medicago	IMGA\|AC174311_4.4	937	87.6	93.3	Aspartyl-tRNA synthetase, class IIb; tRNA synthetase, class II (D, K and N) chr01_pseudomolecule_IMGAG_V2 4381829-4387171 E EGN_Mt071002 20080227
Soybean	Glyma14g11710.3	942	88.0	93.5
Lotus Consensus	KMC002343A_C02	595	99.4	99.4	KMC002343A_c02
3' Unigene	KMC002343A_C02	783	96.7	96.7	KMC002343A_c02
5' Unigene	R_KMC001985A_C01	567	100.0	100.0	R_KMC001985A_c01

A list of protein families, domains and functional sites (searches in InterPro)

IPR002312	Aspartyl-tRNA synthetase, class IIb
chr5.CM0040.770.nc				length: 541 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0004815	aspartate-tRNA ligase activity
Molecular Function	GO:0005524	ATP binding
Biological Process	GO:0006422	aspartyl-tRNA aminoacylation
FPrintScan	PR01042	TRNASYNTHASP	1.6e-23	286-298 303-316 456-472 496-510
IPR004364	tRNA synthetase, class II (D, K and N)
Molecular Function	GO:0004812	aminoacyl-tRNA ligase activity
Molecular Function	GO:0005524	ATP binding
Cellular Component	GO:0005737	cytoplasm
Biological Process	GO:0006418	tRNA aminoacylation for protein translation
HMMPfam	PF00152	tRNA-synt_2	7.8e-90	215-537
IPR004365	Nucleic acid binding, OB-fold, tRNA/helicase-type
Molecular Function	GO:0003676	nucleic acid binding
HMMPfam	PF01336	tRNA_anti	4.5e-07	94-180
IPR004523	Aspartyl-tRNA synthetase archea/euk type
Molecular Function	GO:0004815	aspartate-tRNA ligase activity
Molecular Function	GO:0005524	ATP binding
Cellular Component	GO:0005737	cytoplasm
Biological Process	GO:0006422	aspartyl-tRNA aminoacylation
HMMTigr	TIGR00458	aspS_arch:	1.6e-173	82-541
IPR006195	Aminoacyl-transfer RNA synthetase, class II
Molecular Function	GO:0004812	aminoacyl-tRNA ligase activity
Molecular Function	GO:0005524	ATP binding
Biological Process	GO:0006418	tRNA aminoacylation for protein translation
ProfileScan	PS50862	AA_TRNA_LIGASE_II	18.738	236-533
no_ID
Coil	coil	coiled-coil	NA	20-41
Gene3D	2.40.50.140	no description	1.8e-30	56-187
Gene3D	3.30.930.10	no description	2.2e-101	212-541
HMMPanther	PTHR22594	ASPARTYL/LYSYL-TRNA	6.3e-184	167-195 214-541
HMMPanther	PTHR22594:SF6	ASPARTYL-TRNA	6.3e-184	167-195 214-541
Seg	seg	seg	NA	2-19 20-33 40-47
superfamily	SSF50249	Nucleic	3e-22	56-181
superfamily	SSF55681	Class	3.2e-91	182-541

TargetP V1.0 Prediction Results

Name	Length	cTP	mTP	SP	other	Loc.	RC
chr5.CM0040.770.nc	541	0.762	0.044	0.056	0.649	C	5

Wolf-PSORT

chr5.CM0040.770.nc	cyto 8, nucl 4, cyto_pero 4, cyto_E.R. 4, cyto_plas 4

PTS1 (Peroxisome targeting signal type 1)

entry_id	prediction	score	sppta	spptna	fp	profile
chr5.CM0040.770.nc	Not targeted	-44.910	-0.059	-1.493	64.36%	-43.358