Miyakogusa Predicted Gene

chr4.LjT32J05.120.nc
Related links:
Predicted Sequence Links:
Genome Sequence: LjT32J05
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A9PDA2_POPTR 168 84.6 94.5 (tr|A9PDA2) Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
TAIR_pep AT5G18810.1 157 80.0 88.9 | Symbols: SCL28 | SCL28 (SC35-like splicing factor 28); RNA binding | chr5:6268927-6271160 REVERSE
Medicago IMGA|AC146760_9.5 126 63.7 81.3 RNA-binding region RNP-1 (RNA recognition motif) chr03_pseudomolecule_IMGAG_V2 22846699-22850069 E EGN_Mt071002 20080227
Soybean Glyma07g38270.1 191 60.3 62.1  
Lotus Consensus KMC001027A_C01 517 99.3 99.3 KMC001027A_c01
3' Unigene AV777891 611 100.0 100.0 MPDL028b12_f
5' Unigene AV417836 329 100.0 100.0 MWM149e10_r
A list of protein families, domains and functional sites (searches in InterPro)
chr4.LjT32J05.120.nc length: 293 aa.
IPR000504 RNA-binding region RNP-1 (RNA recognition motif)
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 5.2e-21 47-118
HMMSmart SM00360 no description 3e-18 46-119
ProfileScan PS50102 RRM 16.995 45-123
no_ID  
Gene3D 3.30.70.330 no description 2.1e-24 47-161
HMMPanther PTHR23147 SERINE/ARGININE 4.7e-53 21-273
Seg seg seg NA 2-41
134-194
216-232
242-263
superfamily SSF54928 RNA-binding 7e-25 10-153
Putative transmembrane regions
  From To
TM segments
SOSUI		 266 288
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr4.LjT32J05.120.nc 293 0.694 0.494 0.007 0.084 C 4
Wolf-PSORT
chr4.LjT32J05.120.nc	nucl 8, mito 3, chlo 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr4.LjT32J05.120.nc Twilight zone -8.516 -1.554 -5.852 2.97% -1.110