Miyakogusa Predicted Gene

chr4.CM1616.420.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM1616
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7R6L1_VITVI 412 55.3 74.6 (tr|A7R6L1) Chromosome undetermined scaffold_1327, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00008258001 PE=4 SV=1
TAIR_pep AT1G55890.1 384 52.0 73.9 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:20905029-20906225 FORWARD
Medicago IMGA|AC149206_3.5 182 32.2 53.4 Pentatricopeptide repeat chr02_pseudomolecule_IMGAG_V2 24682964-24684503 E EGN_Mt071002 20080227
Soybean Glyma08g06580.1 551 68.2 82.6  
Lotus Consensus KMC016245A_C01 44.1 91.2 91.2 KMC016245A_c01
3' Unigene BP044414 1049 99.8 99.8 SPD005f09_f
5' Unigene R_KMC001676A_C01 837 100.0 100.0 R_KMC001676A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr4.CM1616.420.nc length: 387 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 2.2 97-131
132-166
168-202
203-237
238-272
273-307
308-342
HMMTigr TIGR00756 PPR: 0.13 97-131
132-167
168-202
203-237
238-272
273-307
308-342
IPR008940 Protein prenyltransferase
superfamily SSF48439 Protein 1.3e-34 101-369
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 1.9e-83 48-367
Seg seg seg NA 11-26
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr4.CM1616.420.nc 387 0.040 0.818 0.040 0.260 M 3
Wolf-PSORT
chr4.CM1616.420.nc	chlo 8, mito 5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr4.CM1616.420.nc Not targeted -44.634 -0.785 -14.597 63.77% -29.252