Miyakogusa Predicted Gene

chr4.CM1334.150.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM1334
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q2PEV8_TRIPR 516 74.9 81.4 (tr|Q2PEV8) Putative DNA binding protein (Fragment) OS=Trifolium pratense PE=2 SV=1
TAIR_pep AT1G11650.2 425 70.9 81.1 | Symbols: ATRBP45B | ATRBP45B; RNA binding | chr1:3914895-3917941 FORWARD
Medicago IMGA|AC202500_12.4 551 81.4 87.1 RNA-binding region RNP-1 (RNA recognition motif) chr08_pseudomolecule_IMGAG_V2 34397955-34393689 F EGN_Mt071002 20080227
Soybean Glyma17g01800.1 563 82.8 86.4  
Lotus Consensus KMC000686A_C02 803 100.0 100.0 KMC000686A_c02
3' Unigene KMC000686A_C02 694 96.0 96.0 KMC000686A_c02
5' Unigene AV410975 823 100.0 100.0 MWM200g10_r
A list of protein families, domains and functional sites (searches in InterPro)
chr4.CM1334.150.nc length: 416 aa.
IPR000504 RNA-binding region RNP-1 (RNA recognition motif)
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 1.7e-20 74-140
168-240
277-342
HMMSmart SM00360 no description 7.5e-21 73-148
167-241
276-343
ProfileScan PS50102 RRM 17.199 72-152
166-245
275-347
no_ID  
Gene3D 3.30.70.330 no description 4.7e-22 65-150
156-259
260-386
HMMPanther PTHR10432 RNA-BINDING 1.7e-185 69-247
264-412
HMMPanther PTHR10432:SF67 NUCLEAR 1.7e-185 69-247
264-412
Seg seg seg NA 2-39
43-66
364-382
401-412
superfamily SSF54928 RNA-binding 1.3e-17 267-380
37-152
153-246
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr4.CM1334.150.nc 416 0.210 0.552 0.012 0.402 M 5
Wolf-PSORT
chr4.CM1334.150.nc	nucl 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr4.CM1334.150.nc Not targeted -47.861 -0.024 -6.996 70.41% -40.841