Miyakogusa Predicted Gene

chr4.CM0680.50.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0680
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7QB95_VITVI 1297 52.7 65.2 (tr|A7QB95) Chromosome chr4 scaffold_73, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00034860001 PE=4 SV=1
TAIR_pep AT3G18730.1 1006 44.3 60.2 | Symbols: MGO3, BRU1, TSK | TSK (TONSOKU) | chr3:6446068-6453051 REVERSE
Medicago IMGA|AC202356_4.3 661 60.8 69.9 Leucine-rich repeat chr04_pseudomolecule_IMGAG_V2 33271932-33264270 H EGN_Mt071002 20080227
Soybean Glyma08g15560.1 1804 67.7 77.6  
3' Unigene KMC005020A_C02 155 90.0 90.0 KMC005020A_c02
5' Unigene R_KMC001375A_C01 155 90.0 90.0 R_KMC001375A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr4.CM0680.50.nc length: 1343 aa.
IPR001440 Tetratricopeptide TPR_1
method AccNumber shortName E-value location
HMMPfam PF00515 TPR_1 0.02 65-98
161-194
204-226
375-408
IPR001611 Leucine-rich repeat
Molecular Function GO:0005515 protein binding    
FPrintScan PR00019 LEURICHRPT 0.0093 951-964
1282-1295
HMMPfam PF00560 LRR_1 2.8 1284-1306
IPR003590 Leucine-rich repeat, ribonuclease inhibitor subtype
HMMSmart SM00368 no description 2.2e+02 948-975
976-1003
1060-1087
1115-1142
1144-1171
1172-1198
1282-1309
IPR013026 Tetratricopeptide region
HMMSmart SM00028 no description 52 65-98
161-194
204-237
244-277
375-408
415-448
ProfileScan PS50005 TPR 5.310 25-58
65-98
161-194
204-237
244-277
375-408
415-448
ProfileScan PS50293 TPR_REGION 9.025 25-98
161-277
375-448
IPR013105 Tetratricopeptide TPR_2
HMMPfam PF07719 TPR_2 0.00041 244-277
no_ID  
Coil coil coiled-coil NA 277-325
Gene3D 1.25.40.10 no description 0.0064 4-273
346-444
Gene3D 3.80.10.10 no description 5.7e-39 853-1235
HMMPanther PTHR10098 RAPSYN-RELATED 6.1e-201 36-470
487-626
652-891
HMMPanther PTHR10098:SF8 gb 6.1e-201 36-470
487-626
652-891
ProfileScan PS50503 LRR_RI 19.017 1069-1180
Seg seg seg NA 358-367
478-493
677-685
1015-1031
1057-1081
superfamily SSF48452 TPR-like 1.6e-31 14-447
superfamily SSF52047 RNI-like 1.5e-22 916-1300
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr4.CM0680.50.nc 1343 0.061 0.119 0.099 0.906 _ 2
Wolf-PSORT
chr4.CM0680.50.nc	nucl 6, cyto 6, cyto_nucl 6
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr4.CM0680.50.nc Not targeted -23.472 -2.124 -0.156 18.13% -21.192