Miyakogusa Predicted Gene

chr4.CM0421.390.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0421
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A2Q1N3_MEDTR 983 78.8 84.6 (tr|A2Q1N3) Lysyl-tRNA synthetase OS=Medicago truncatula GN=MtrDRAFT_AC148970g25v2 PE=3 SV=1
TAIR_pep AT3G11710.1 902 77.7 87.1 | Symbols: | lysyl-tRNA synthetase, putative / lysine--tRNA ligase, putative | chr3:3702365-3705619 REVERSE
Medicago IMGA|AC148970_25.4 983 78.8 84.6 Lysyl-tRNA synthetase, class-2; Aminoacyl-transfer RNA synthetase, class II chr02_pseudomolecule_IMGAG_V2 9517384-9525262 E EGN_Mt071002 20080227
Soybean Glyma13g21870.1 1036 83.5 87.5  
Lotus Consensus KMC008903A_C01 198 100.0 100.0 KMC008903A_c01
3' Unigene KMC008903A_C01 1001 100.0 100.0 KMC008903A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr4.CM0421.390.nc length: 597 aa.
IPR002313 Lysyl-tRNA synthetase, class-2
method AccNumber shortName E-value location
Molecular Function GO:0004824 lysine-tRNA ligase activity    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006430 lysyl-tRNA aminoacylation    
FPrintScan PR00982 TRNASYNTHLYS 1.9e-38 280-290
296-312
325-338
343-360
478-494
HMMPanther PTHR22594:SF4 LYSYL-TRNA 2e-209 188-216
242-597
HMMTigr TIGR00499 lysS_bact: 8.6e-187 66-597
IPR004364 tRNA synthetase, class II (D, K and N)
Molecular Function GO:0004812 aminoacyl-tRNA ligase activity    
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005737 cytoplasm    
Biological Process GO:0006418 tRNA aminoacylation for protein translation    
HMMPfam PF00152 tRNA-synt_2 9.1e-130 243-595
IPR004365 Nucleic acid binding, OB-fold, tRNA/helicase-type
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF01336 tRNA_anti 7.7e-14 120-201
IPR006195 Aminoacyl-transfer RNA synthetase, class II
Molecular Function GO:0004812 aminoacyl-tRNA ligase activity    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006418 tRNA aminoacylation for protein translation    
ProfileScan PS50862 AA_TRNA_LIGASE_II 25.884 270-595
no_ID  
Coil coil coiled-coil NA 19-56
Gene3D 2.40.50.140 no description 1.1e-37 54-209
Gene3D 3.30.930.10 no description 7.9e-117 236-597
HMMPanther PTHR22594 ASPARTYL/LYSYL-TRNA 2e-209 188-216
242-597
Seg seg seg NA 22-53
211-227
superfamily SSF50249 Nucleic 1.4e-30 64-209
superfamily SSF55681 Class 1.4e-97 229-595
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr4.CM0421.390.nc 597 0.663 0.037 0.091 0.771 _ 5
Wolf-PSORT
chr4.CM0421.390.nc	cyto 9, nucl 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr4.CM0421.390.nc Not targeted -51.674 -31.331 -2.257 77.36% -18.086