Miyakogusa Predicted Gene

chr4.CM0333.40.nd
Related links:
Predicted Sequence Links:
Genome Sequence: CM0333
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q8H0G9_TOBAC 1425 80.3 88.3 (tr|Q8H0G9) MCM protein-like protein OS=Nicotiana tabacum GN=B37 PE=2 SV=1
TAIR_pep AT1G44900.1 1324 72.5 82.2 | Symbols: | ATP binding / DNA binding / DNA-dependent ATPase | chr1:16972731-16976897 FORWARD
Medicago IMGA|AC146651_21.4 338 34.3 54.3 MCM protein 3; Nucleic acid-binding, OB-fold chr04_pseudomolecule_IMGAG_V2 893585-887393 E EGN_Mt071002 20080227
Soybean Glyma07g36680.1 1589 84.6 89.8  
Lotus Consensus KMC000104A_C01 767 99.5 99.5 KMC000104A_c01
3' Unigene KMC000104A_C01 662 100.0 100.0 KMC000104A_c01
5' Unigene AV410279 507 100.0 100.0 MWL070g01_r
A list of protein families, domains and functional sites (searches in InterPro)
chr4.CM0333.40.nd length: 931 aa.
IPR001208 MCM
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006270 DNA replication initiation    
Molecular Function GO:0008094 DNA-dependent ATPase activity    
BlastProDom PD001041 Q6QNH2_WHEAT_Q6QNH2; 2e-16 475-526
FPrintScan PR01657 MCMFAMILY 1.3e-33 534-549
594-608
622-635
646-658
673-681
HMMPanther PTHR11630 DNA 0 218-708
727-905
HMMPfam PF00493 MCM 7.1e-212 480-824
HMMSmart SM00350 no description 1.9e-287 310-824
ProfileScan PS50051 MCM_2 92.346 493-699
ScanRegExp PS00847 MCM_1 8e-5 602-610
IPR008045 MCM protein 2
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006270 DNA replication initiation    
FPrintScan PR01658 MCMPROTEIN2 8.3e-30 323-340
346-358
381-395
442-453
457-468
no_ID  
Gene3D 2.40.50.140 no description 4e-20 311-461
Gene3D 3.40.50.300 no description 2.1e-25 504-684
HMMPanther PTHR11630:SF44 DNA 0 218-708
727-905
Seg seg seg NA 3-14
40-59
84-94
176-189
903-911
superfamily SSF50249 Nucleic 3.4e-60 207-466
superfamily SSF52540 P-loop 3.5e-37 497-847
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr4.CM0333.40.nd 931 0.759 0.055 0.145 0.432 C 4
Wolf-PSORT
chr4.CM0333.40.nd	nucl 8, cysk 1.5, cysk_plas 1.5, chlo 1, vacu 1, pero 1, golg 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr4.CM0333.40.nd Not targeted -51.147 -17.226 -11.925 76.47% -21.996