Miyakogusa Predicted Gene

chr4.CM0333.280.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0333
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7Q8T6_VITVI 845 74.6 83.2 (tr|A7Q8T6) Chromosome chr5 scaffold_64, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00033177001 PE=4 SV=1
TAIR_pep AT3G06550.3 830 72.4 83.2 | Symbols: | similar to O-acetyltransferase family protein [Arabidopsis thaliana] (TAIR:AT2G34410.2); similar to O-acetyltransferase family protein [Arabidopsis thaliana] (TAIR:AT2G34410.1); similar to O-acetyltransferase-related [Arabidopsis thaliana] (TAIR:AT5G46340.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN63274.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44945.1); similar to hypothetical protein OsI_020420 [Oryza sativa (indica cultivar-group)] (GB:EAY99187.1); contains InterPro domain Cas1p-like (InterPro:IPR012419) | chr3:2039323-2042670 REVERSE
Soybean Glyma07g36550.1 934 83.1 88.3  
Lotus Consensus KMC005436A_C01 83.8 82.0 82.0 KMC005436A_c01
3' Unigene BP070676 83.8 88.5 88.5 GNf045c09
5' Unigene R_KMC000848A_C01 44.1 100.0 100.0 R_KMC000848A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr4.CM0333.280.nc length: 549 aa.
IPR012419 Cas1p-like
method AccNumber shortName E-value location
HMMPanther PTHR13533 FAMILY 5.9e-254 193-543
HMMPfam PF07779 Cas1p 1e-163 116-353
no_ID  
HMMPanther PTHR13533:SF1 SUBFAMILY 5.9e-254 193-543
Seg seg seg NA 137-145
239-252
Putative transmembrane regions
  From To
TM segments
SOSUI		 11 33
134 155
202 223
247 269
283 305
375 397
424 446
476 498
521 543
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr4.CM0333.280.nc 549 0.016 0.050 0.744 0.238 S 3
Wolf-PSORT
chr4.CM0333.280.nc	plas 9, vacu 2, golg 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr4.CM0333.280.nc Not targeted -47.200 -5.434 -9.623 69.10% -32.143