Miyakogusa Predicted Gene

chr4.CM0256.180.nd
Related links:
Predicted Sequence Links:
Genome Sequence: CM0256
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7PNI7_VITVI 465 46.6 57.8 (tr|A7PNI7) Chromosome chr1 scaffold_22, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00021274001 PE=4 SV=1
TAIR_pep AT2G02160.1 320 41.7 54.5 | Symbols: | zinc finger (CCCH-type) family protein | chr2:553406-555898 REVERSE
Medicago IMGA|AC157983_7.4 150 55.0 64.2 Zinc finger, CCCH-type chr08_pseudomolecule_IMGAG_V2 25866565-25869502 H EGN_Mt071002 20080227
Soybean Glyma05g26620.1 786 67.6 73.9  
Lotus Consensus KMC000857A_C01 438 99.6 99.6 KMC000857A_c01
3' Unigene KMC000857A_C01 757 99.7 99.7 KMC000857A_c01
5' Unigene R_KMC000255A_C01 48.1 100.0 100.0 R_KMC000255A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr4.CM0256.180.nd length: 699 aa.
IPR000571 Zinc finger, CCCH-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF00642 zf-CCCH 2.8e-05 26-53
57-81
119-144
HMMSmart SM00356 no description 3.3e-05 26-53
58-81
118-144
no_ID  
Seg seg seg NA 3-21
87-103
415-434
631-671
679-689
superfamily SSF90229 CCCH 4.6e-07 113-149
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr4.CM0256.180.nd 699 0.349 0.280 0.057 0.353 _ 5
Wolf-PSORT
chr4.CM0256.180.nd	nucl 13.5, cyto_nucl 7.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr4.CM0256.180.nd Not targeted -60.330 -0.015 -14.017 89.02% -46.298