Miyakogusa Predicted Gene
- chr4.CM0244.550.nc
- Related links:
- Predicted Sequence Links:
- Genome Sequence: CM0244
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
A7Q6A8_VITVI |
276 |
61.3 |
71.7 |
(tr|A7Q6A8) Chromosome chr11 scaffold_56, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00031318001 PE=4 SV=1 |
|---|
| TAIR_pep |
AT3G55600.1 |
268 |
60.0 |
72.5 |
| Symbols: | similar to cation exchanger, putative (CAX10) [Arabidopsis thaliana] (TAIR:AT1G54110.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43197.1); contains domain PD119426 (PD119426) | chr3:20631661-20633320 FORWARD |
|---|
| Soybean |
Glyma14g03590.4 |
361 |
79.2 |
83.3 |
|
|---|
| 3' Unigene |
BP083332 |
733 |
98.0 |
98.0 |
MR096a06_f |
|---|
- A list of protein families, domains and functional sites (searches in InterPro)
| chr4.CM0244.550.nc |
length: 238 aa. |
| no_ID |
|
| method |
AccNumber |
shortName |
E-value |
location |
| Seg |
seg |
seg |
NA |
15-24
220-231 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
214 |
236 |
- TargetP V1.0 Prediction Results
| Name |
Length |
cTP |
mTP |
SP |
other |
Loc. |
RC |
| chr4.CM0244.550.nc |
238 |
0.043 |
0.383 |
0.050 |
0.239 |
M |
5
|
- Wolf-PSORT
chr4.CM0244.550.nc golg 5, chlo 3, golg_plas 3, cyto 2, chlo_mito 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| chr4.CM0244.550.nc |
Not targeted |
-132.654 |
-73.055 |
-13.408 |
100.00% |
-46.191
|