| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| TrEMBL | A7QUB2_VITVI | 155 | 49.7 | 63.4 | (tr|A7QUB2) Chromosome chr11 scaffold_177, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00006766001 PE=4 SV=1 |
| TAIR_pep | AT5G57120.1 | 103 | 45.9 | 59.3 | | Symbols: | similar to unnamed protein product [Vitis vinifera] (GB:CAO69558.1); contains InterPro domain SRP40, C-terminal (InterPro:IPR007718); contains InterPro domain LisH dimerisation motif (InterPro:IPR006594) | chr5:23139993-23141626 REVERSE |
| Soybean | Glyma17g06540.1 | 324 | 53.1 | 58.0 |
| chr4.CM0244.330.nc | length: 403 aa. | |||
| IPR006594 | Lissencephaly type-1-like homology motif | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| HMMSmart | SM00667 | no description | 0.0006 | 17-49 |
| ProfileScan | PS50896 | LISH | 9.619 | 17-49 |
| IPR007718 | SRP40, C-terminal | |||
| HMMPfam | PF05022 | SRP40_C | 1.4e-43 | 304-397 |
| no_ID | ||||
| BlastProDom | PD015362 | Q93WC7_ARATH_Q93WC7; | 5e-14 | 325-398 |
| HMMPanther | PTHR23216 | NUCLEOLAR | 2.2e-22 | 328-398 |
| Seg | seg | seg | NA | 9-21 121-129 135-157 195-207 375-386 |
| From | To | |
|---|---|---|
| TM segments SOSUI |
112 | 133 |
| Name | Length | cTP | mTP | SP | other | Loc. | RC |
|---|---|---|---|---|---|---|---|
| chr4.CM0244.330.nc | 403 | 0.046 | 0.281 | 0.046 | 0.839 | _ | 3 |
chr4.CM0244.330.nc nucl 5.5, cysk_nucl 3.5, chlo 3, vacu 2, chlo_mito 2
| entry_id | prediction | score | sppta | spptna | fp | profile |
|---|---|---|---|---|---|---|
| chr4.CM0244.330.nc | Not targeted | -60.984 | -1.952 | -9.010 | 89.68% | -50.022 |