Miyakogusa Predicted Gene

chr4.CM0234.40.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0234
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7PF70_VITVI 177 45.4 56.2 (tr|A7PF70) Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00016932001 PE=4 SV=1
TAIR_pep AT1G15340.1 149 71.6 87.5 | Symbols: MBD10 | MBD10 (methyl-CpG-binding domain 10); DNA binding | chr1:5275890-5277469 REVERSE
Medicago IMGA|AC166899_24.4 214 57.0 65.2 Methyl-CpG binding chr08_pseudomolecule_IMGAG_V2 26292565-26297486 E EGN_Mt071002 20080227
Soybean Glyma06g30350.1 248 49.2 59.9  
Lotus Consensus KMC002835A_C01 676 100.0 100.0 KMC002835A_c01
3' Unigene KMC002835A_C01 1497 99.6 99.6 KMC002835A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr4.CM0234.40.nc length: 307 aa.
IPR001199 Cytochrome b5
method AccNumber shortName E-value location
Molecular Function GO:0020037 heme binding    
Molecular Function GO:0046914 transition metal ion binding    
ScanRegExp PS00191 CYTOCHROME_B5_1 NA 70-77
IPR001739 Methyl-CpG binding
Molecular Function GO:0003677 DNA binding    
HMMPfam PF01429 MBD 4e-16 20-93
ProfileScan PS50982 MBD 14.267 20-90
no_ID  
Coil coil coiled-coil NA 207-228
Gene3D 3.30.890.10 no description 0.00082 29-123
Seg seg seg NA 5-24
113-139
superfamily SSF54171 DNA-binding 2.5e-15 7-95
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr4.CM0234.40.nc 307 0.147 0.081 0.067 0.813 _ 2
Wolf-PSORT
chr4.CM0234.40.nc	nucl 11, cyto 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr4.CM0234.40.nc Not targeted -42.510 0 -2.184 59.09% -40.326