Miyakogusa Predicted Gene

chr4.CM0229.490.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0229
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q2PEY0_TRIPR 546 63.1 70.8 (tr|Q2PEY0) Putative ras-GTPase-activating protein SH3-domain binding protein OS=Trifolium pratense PE=2 SV=1
TAIR_pep AT3G25150.1 257 41.3 57.0 | Symbols: | nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein | chr3:9157168-9159369 REVERSE
Medicago IMGA|AC146567_42.4 518 61.2 68.1 RNA-binding region RNP-1 (RNA recognition motif); Nuclear transport factor 2 chr04_pseudomolecule_IMGAG_V2 24158052-24162683 E EGN_Mt071002 20080227
Soybean Glyma20g03060.1 583 65.3 72.2  
Lotus Consensus KMC004473A_C01 607 100.0 100.0 KMC004473A_c01
3' Unigene KMC004473A_C01 912 100.0 100.0 KMC004473A_c01
5' Unigene AV407453 355 100.0 100.0 MWL024b02_r
A list of protein families, domains and functional sites (searches in InterPro)
chr4.CM0229.490.nc length: 463 aa.
IPR000504 RNA-binding region RNP-1 (RNA recognition motif)
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 3.1e-13 294-363
HMMSmart SM00360 no description 1.5e-10 293-364
ProfileScan PS50102 RRM 13.294 292-375
IPR002075 Nuclear transport factor 2
Cellular Component GO:0005622 intracellular    
Biological Process GO:0006810 transport    
HMMPfam PF02136 NTF2 1.3e-42 13-129
ProfileScan PS50177 NTF2_DOMAIN 33.568 13-129
no_ID  
Gene3D 3.10.450.50 no description 6e-32 4-129
Gene3D 3.30.70.330 no description 3.9e-13 294-408
HMMPanther PTHR10693 RNA-BINDING 5.7e-77 20-452
Seg seg seg NA 50-58
204-220
390-413
423-436
superfamily SSF54427 NTF2-like 1.1e-38 1-134
superfamily SSF54928 RNA-binding 1.5e-15 284-397
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr4.CM0229.490.nc 463 0.100 0.209 0.070 0.830 _ 2
Wolf-PSORT
chr4.CM0229.490.nc	cyto 6, nucl 4, cysk 3, cyto_E.R. 3, cyto_plas 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr4.CM0229.490.nc Not targeted -37.133 0 -3.344 46.66% -33.789