Miyakogusa Predicted Gene

chr4.CM0179.450.nd
Related links:
Predicted Sequence Links:
Genome Sequence: CM0179
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A5BU43_VITVI 630 68.3 78.6 (tr|A5BU43) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_013807 PE=4 SV=1
TAIR_pep AT5G57870.2 515 60.2 74.9 | Symbols: | eukaryotic translation initiation factor 4F, putative / eIF-4F, putative | chr5:23456981-23460659 FORWARD
Medicago IMGA|AC140546_1.5 668 73.3 82.2 Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 chr08_pseudomolecule_IMGAG_V2 33611427-33617657 F EGN_Mt071002 20080227
Soybean Glyma17g08030.1 686 75.5 84.7  
Lotus Consensus KMC010709A_C01 168 98.9 98.9 KMC010709A_c01
3' Unigene KMC010709A_C01 876 96.7 96.7 KMC010709A_c01
5' Unigene R_KMC000435A_C01 1667 99.2 99.2 R_KMC000435A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr4.CM0179.450.nd length: 454 aa.
IPR003890 Initiation factor eIF-4 gamma, middle
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
HMMPfam PF02854 MIF4G 1.9e-26 4-106
IPR003891 Initiation factor eIF-4 gamma, MA3
HMMPfam PF02847 MA3 7.1e-37 290-402
HMMSmart SM00544 no description 2.8e-33 290-402
no_ID  
Gene3D 1.25.40.180 no description 3.5e-28 2-109
HMMPanther PTHR23253 EUKARYOTIC 2.5e-243 3-454
HMMPanther PTHR23253:SF2 EUKARYOTIC 2.5e-243 3-454
Seg seg seg NA 151-175
superfamily SSF48371 ARM 6.7e-26 4-109
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr4.CM0179.450.nd 454 0.016 0.315 0.175 0.713 _ 4
Wolf-PSORT
chr4.CM0179.450.nd	chlo 5, nucl 5, cyto 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr4.CM0179.450.nd Twilight zone -2.813 -0.005 -0.568 1.10% -2.239