Miyakogusa Predicted Gene

chr4.CM0172.160.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0172
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7PCT3_VITVI 715 85.5 90.6 (tr|A7PCT3) Chromosome chr17 scaffold_12, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00015999001 PE=3 SV=1
TAIR_pep AT5G63120.2 699 76.3 86.8 | Symbols: | ethylene-responsive DEAD box RNA helicase, putative (RH30) | chr5:25336193-25339297 REVERSE
Medicago IMGA|AC155896_32.5 672 74.1 85.5 Helicase, C-terminal chr02_pseudomolecule_IMGAG_V2 22673306-22667358 E EGN_Mt071002 20080227
Soybean Glyma05g02590.1 781 86.0 91.5  
Lotus Consensus KMC000777A_C01 607 100.0 100.0 KMC000777A_c01
3' Unigene KMC003409A_C01 767 98.1 98.1 KMC003409A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr4.CM0172.160.nc length: 585 aa.
IPR000629 ATP-dependent helicase, DEAD-box
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
ScanRegExp PS00039 DEAD_ATP_HELICASE 8e-5 314-322
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 1.4e-35 426-502
HMMSmart SM00490 no description 5.7e-33 421-502
IPR011545 DEAD/DEAH box helicase, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 1.2e-71 186-357
IPR014001 DEAD-like helicases, N-terminal
HMMSmart SM00487 no description 2e-66 181-384
no_ID  
Gene3D 3.40.50.300 no description 1.1e-47 149-378
378-542
HMMPanther PTHR10967 DEAD 1.4e-268 115-132
154-541
HMMPanther PTHR10967:SF50 ATP-DEPENDENT 1.4e-268 115-132
154-541
ProfileScan PS50136 HELICASE 50.787 238-500
Seg seg seg NA 9-23
39-58
65-102
494-509
542-572
superfamily SSF52540 P-loop 4.3e-45 109-284
285-540
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr4.CM0172.160.nc 585 0.073 0.636 0.101 0.179 M 3
Wolf-PSORT
chr4.CM0172.160.nc	chlo 12, cyto 1, vacu 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr4.CM0172.160.nc Not targeted -28.168 -0.928 -6.834 26.73% -20.406