Miyakogusa Predicted Gene

chr4.CM0126.460.nd
Related links:
Predicted Sequence Links:
Genome Sequence: CM0126
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL B1PDS1_9MAGN 303 68.7 78.7 (tr|B1PDS1) Hsp70-interacting protein 1 OS=Vitis labrusca PE=2 SV=1
TAIR_pep AT4G22670.1 305 66.7 77.5 | Symbols: ATHIP1 | ATHIP1 (ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 1); binding | chr4:11918247-11920682 FORWARD
Medicago IMGA|AC161034_17.5 234 51.6 68.2 Thioredoxin domain 2; Thioredoxin fold chr04_pseudomolecule_IMGAG_V2 39225432-39222043 F EGN_Mt071002 20080227
Soybean Glyma17g14280.1 338 76.0 83.1  
Lotus Consensus KMC005670A_C01 42.1 100.0 100.0 KMC005670A_c01
3' Unigene BP070250 313 100.0 100.0 GNf039f06
5' Unigene R_KMC002106A_C01 299 100.0 100.0 R_KMC002106A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr4.CM0126.460.nd length: 223 aa.
IPR001440 Tetratricopeptide TPR_1
method AccNumber shortName E-value location
HMMPfam PF00515 TPR_1 0.22 115-148
149-182
183-216
IPR013026 Tetratricopeptide region
HMMSmart SM00028 no description 15 115-148
149-182
183-216
ProfileScan PS50005 TPR 6.490 115-148
149-182
183-216
ProfileScan PS50293 TPR_REGION 19.905 115-216
no_ID  
Gene3D 1.25.40.10 no description 8e-28 103-215
HMMPanther PTHR22904 TPR 4.5e-65 119-223
HMMPanther PTHR22904:SF34 HSC70-INTERACTING 4.5e-65 119-223
Seg seg seg NA 64-86
superfamily SSF48452 TPR-like 2.8e-22 106-215
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr4.CM0126.460.nd 223 0.141 0.111 0.151 0.810 _ 2
Wolf-PSORT
chr4.CM0126.460.nd	mito 5, plas 3.5, nucl_plas 3.5, cyto 3, nucl 2.5, chlo_mito 2.5, cyto_mito 2.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr4.CM0126.460.nd Not targeted -49.784 -0.152 -8.591 74.05% -41.041