Miyakogusa Predicted Gene

chr4.CM0087.70.nd
Related links:
Predicted Sequence Links:
Genome Sequence: CM0087
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q39889_SOYBN 1653 90.8 95.2 (tr|Q39889) Heat shock protein OS=Glycine max GN=SB100 PE=2 SV=1
TAIR_pep AT1G74310.1 1577 85.5 93.5 | Symbols: HSP101, HOT1, ATHSP101 | ATHSP101 (HEAT SHOCK PROTEIN 101); ATP binding / ATPase | chr1:27940376-27943523 REVERSE
Medicago IMGA|AC150844_31.4 828 49.9 69.3 AAA ATPase, central region; Clp, N terminal chr06_pseudomolecule_IMGAG_V2 2990726-2982379 F EGN_Mt071002 20080227
Soybean Glyma05g00540.1 1658 91.1 95.3  
Lotus Consensus KMC000228A_C01 1540 99.4 99.4 KMC000228A_c01
3' Unigene KMC000228A_C01 1548 99.4 99.4 KMC000228A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr4.CM0087.70.nd length: 909 aa.
IPR001270 Chaperonin clpA/B
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
FPrintScan PR00300 CLPPROTEASEA 2.8e-42 602-620
647-665
676-694
709-723
ScanRegExp PS00870 CLPAB_1 8e-5 295-307
ScanRegExp PS00871 CLPAB_2 8e-5 632-650
IPR003593 AAA+ ATPase, core
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 no description 3e-11 199-344
598-769
IPR003959 AAA ATPase, core
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00004 AAA 7.2e-16 202-316
IPR004176 Clp, N-terminal
Molecular Function GO:0005515 protein binding    
Biological Process GO:0019538 protein metabolism    
HMMPfam PF02861 Clp_N 4.1e-10 17-67
96-146
IPR013093 ATPase AAA-2
HMMPfam PF07724 AAA_2 5.2e-109 597-762
no_ID  
Coil coil coiled-coil NA 253-274
406-441
473-494
Gene3D 1.10.8.60 no description 6.8e-24 768-873
Gene3D 3.40.50.300 no description 1.2e-89 160-352
550-767
HMMPanther PTHR11638 ATP-DEPENDENT 0 1-403
460-699
HMMPanther PTHR11638:SF18 CHAPERONE 0 1-403
460-699
Seg seg seg NA 489-504
superfamily SSF52540 P-loop 0.01 548-863
177-309
310-542
superfamily SSF81923 Double 4.9e-30 4-143
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr4.CM0087.70.nd 909 0.244 0.051 0.019 0.857 _ 2
Wolf-PSORT
chr4.CM0087.70.nd	cyto 11, chlo 1, nucl 1, cysk 1, cysk_nucl 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr4.CM0087.70.nd Not targeted -82.893 -0.015 -29.983 99.23% -52.894