Miyakogusa Predicted Gene

chr4.CM0079.170.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0079
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7P9G1_VITVI 484 74.8 88.0 (tr|A7P9G1) Chromosome chr3 scaffold_8, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00036552001 PE=4 SV=1
TAIR_pep AT3G19130.1 458 71.4 83.7 | Symbols: ATRBP47B | ATRBP47B (RNA-BINDING PROTEIN 47B); RNA binding | chr3:6611404-6613829 REVERSE
Medicago IMGA|AC127168_20.5 560 80.1 85.1 RNA-binding region RNP-1 (RNA recognition motif) chr04_pseudomolecule_IMGAG_V2 28623498-28619047 F EGN_Mt071002 20080227
Soybean Glyma07g33300.1 592 85.1 89.0  
Lotus Consensus KMC010025A_C01 555 99.3 99.3 KMC010025A_c01
3' Unigene KMC010025A_C01 809 98.4 98.4 KMC010025A_c01
5' Unigene R_KMC000711A_C01 559 100.0 100.0 R_KMC000711A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr4.CM0079.170.nc length: 445 aa.
IPR000504 RNA-binding region RNP-1 (RNA recognition motif)
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 1.4e-19 116-182
210-282
330-395
HMMSmart SM00360 no description 7.5e-21 115-190
209-283
329-396
ProfileScan PS50102 RRM 18.086 114-194
208-287
328-400
no_ID  
Gene3D 3.30.70.330 no description 1e-24 99-192
209-301
325-438
HMMPanther PTHR10432 RNA-BINDING 3.3e-178 111-289
317-439
HMMPanther PTHR10432:SF67 NUCLEAR 3.3e-178 111-289
317-439
Seg seg seg NA 13-109
293-301
412-426
superfamily SSF54928 RNA-binding 2.3e-20 293-421
35-192
195-288
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr4.CM0079.170.nc 445 0.175 0.201 0.062 0.749 _ 3
Wolf-PSORT
chr4.CM0079.170.nc	nucl 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr4.CM0079.170.nc Not targeted -38.894 -1.301 -2.449 50.79% -35.145