Miyakogusa Predicted Gene

chr4.CM0042.2210.nc

Related links:

GeneModel
GBrowse(chr4.CM0042.2210.nc)

Predicted Sequence Links:

Genome Sequence: CM0042

Full length sequence(1622391 bp)
Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	Q1SMZ9_MEDTR	1410	72.8	77.7	(tr\|Q1SMZ9) Protein kinase OS=Medicago truncatula GN=MtrDRAFT_AC139526g23v2 PE=4 SV=1
TAIR_pep	AT1G73660.1	1052	56.6	65.7	\| Symbols: \| protein kinase family protein \| chr1:27695908-27700379 REVERSE
Medicago	IMGA\|AC139526_61.4	1273	74.8	79.8	Protein kinase chr04_pseudomolecule_IMGAG_V2 38991698-38997126 E EGN_Mt071002 20080227
Soybean	Glyma08g05720.1	1440	72.0	77.5
Lotus Consensus	KMC000249A_C01	468	98.8	98.8	KMC000249A_c01
3' Unigene	KMC000249A_C01	751	96.8	96.8	KMC000249A_c01
5' Unigene	AV407262	317	100.0	100.0	MWL020d06_r

A list of protein families, domains and functional sites (searches in InterPro)

IPR000719	Protein kinase
chr4.CM0042.2210.nc				length: 1006 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0004672	protein kinase activity
Molecular Function	GO:0005524	ATP binding
Biological Process	GO:0006468	protein amino acid phosphorylation
BlastProDom	PD000001	Q9C9U5_ARATH_Q9C9U5;	5e-123	726-983
ProfileScan	PS50011	PROTEIN_KINASE_DOM	43.326	726-982
ScanRegExp	PS00107	PROTEIN_KINASE_ATP	8e-5	732-753
IPR001245	Tyrosine protein kinase
Molecular Function	GO:0004713	protein-tyrosine kinase activity
Molecular Function	GO:0005524	ATP binding
Biological Process	GO:0006468	protein amino acid phosphorylation
FPrintScan	PR00109	TYRKINASE	4.2e-12	800-813 839-857 886-896 905-927 949-971
HMMPfam	PF07714	Pkinase_Tyr	9.4e-78	726-978
IPR002290	Serine/threonine protein kinase
Molecular Function	GO:0004674	protein serine/threonine kinase activity
Molecular Function	GO:0005524	ATP binding
Biological Process	GO:0006468	protein amino acid phosphorylation
HMMSmart	SM00220	no description	9.5e-62	726-981
IPR008271	Serine/threonine protein kinase, active site
Molecular Function	GO:0004674	protein serine/threonine kinase activity
Biological Process	GO:0006468	protein amino acid phosphorylation
ScanRegExp	PS00108	PROTEIN_KINASE_ST	8e-5	845-857
IPR011009	Protein kinase-like
superfamily	SSF56112	Protein	5.9e-88	696-982
no_ID
Coil	coil	coiled-coil	NA	203-224
Gene3D	1.10.510.10	no description	6.1e-58	802-1006
Gene3D	3.30.200.20	no description	4.9e-22	718-802
HMMPanther	PTHR23257	SERINE-THREONINE	6.3e-212	718-1003
HMMPanther	PTHR23257:SF80	MAP3K	6.3e-212	718-1003
Seg	seg	seg	NA	26-43 55-62 371-393 615-635 647-665 819-833

TargetP V1.0 Prediction Results

Name	Length	cTP	mTP	SP	other	Loc.	RC
chr4.CM0042.2210.nc	1006	0.949	0.024	0.004	0.164	C	2

Wolf-PSORT

chr4.CM0042.2210.nc	E.R. 4, mito 3, cyto_E.R. 3, nucl 2, cyto 2, cyto_nucl 2, chlo_mito 2, E.R._plas 2

PTS1 (Peroxisome targeting signal type 1)

entry_id	prediction	score	sppta	spptna	fp	profile
chr4.CM0042.2210.nc	Not targeted	-43.572	0	-13.385	61.46%	-30.186