Miyakogusa Predicted Gene

chr4.CM0042.1500.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0042
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A5AY88_VITVI 1524 87.2 92.0 (tr|A5AY88) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023086 PE=4 SV=1
TAIR_pep AT1G68020.2 1446 80.5 88.3 | Symbols: TPS6, ATTPS6 | ATTPS6 (Arabidopsis thaliana trehalose phosphatase/synthase 6); trehalose-phosphatase | chr1:25501156-25503904 FORWARD
Medicago IMGA|AC202355_21.4 1558 88.0 91.8 Glycosyl transferase, family 20; Trehalose-phosphatase chr04_pseudomolecule_IMGAG_V2 38218689-38214607 E EGN_Mt071002 20080227
Soybean Glyma02g09480.1 1336 86.9 92.7  
Lotus Consensus KMC000957A_C01 438 97.6 97.6 KMC000957A_c01
3' Unigene KMC000957A_C01 961 97.4 97.4 KMC000957A_c01
5' Unigene AV415294 747 100.0 100.0 MWM107h01_r
A list of protein families, domains and functional sites (searches in InterPro)
chr4.CM0042.1500.nc length: 855 aa.
IPR001830 Glycosyl transferase, family 20
method AccNumber shortName E-value location
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0005992 trehalose biosynthesis    
HMMPfam PF00982 Glyco_transf_20 9.5e-264 60-552
IPR003337 Trehalose-phosphatase
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0005992 trehalose biosynthesis    
HMMPfam PF02358 Trehalose_PPase 1.3e-97 601-836
HMMTigr TIGR00685 T6PP: 9.5e-11 595-847
IPR006379 HAD-superfamily hydrolase, subfamily IIB
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0008152 metabolism    
HMMTigr TIGR01484 HAD-SF-IIB: 6.2e-09 599-807
no_ID  
Gene3D 3.40.50.1000 no description 1.1e-24 597-845
Gene3D 3.40.50.2000 no description 8.5e-77 66-330
HMMPanther PTHR10788 TREHALOSE-6-PHOSPHATE 7.8e-253 130-465
481-846
Seg seg seg NA 91-105
superfamily SSF53756 UDP-Glycosyltransferase/glycogen 4.7e-95 60-556
superfamily SSF56784 HAD-like 1.6e-13 595-807
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr4.CM0042.1500.nc 855 0.257 0.151 0.148 0.301 _ 5
Wolf-PSORT
chr4.CM0042.1500.nc	cyto 5, chlo 4, nucl 2, chlo_mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr4.CM0042.1500.nc Not targeted -35.080 -0.585 -9.233 41.87% -25.262