Miyakogusa Predicted Gene

chr4.CM0042.1300.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0042
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A9PHT5_POPTR 469 73.1 76.8 (tr|A9PHT5) Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
TAIR_pep AT2G21270.2 432 68.1 73.4 | Symbols: | ubiquitin fusion degradation UFD1 family protein | chr2:9115207-9117093 FORWARD
Medicago IMGA|AC140035_34.4 492 75.3 78.4 Ubiquitin fusion degradation protein UFD1 chr04_pseudomolecule_IMGAG_V2 38030687-38035543 F EGN_Mt071002 20080227
Soybean Glyma05g34630.2 483 76.5 78.7  
Lotus Consensus KMC011647A_C01 823 99.5 99.5 KMC011647A_c01
3' Unigene KMC004456A_C01 525 96.9 96.9 KMC004456A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr4.CM0042.1300.nc length: 319 aa.
IPR004854 Ubiquitin fusion degradation protein UFD1
method AccNumber shortName E-value location
Biological Process GO:0006511 ubiquitin-dependent protein catabolism    
HMMPanther PTHR12555 UBIQUITIN 5.9e-112 21-238
HMMPfam PF03152 UFD1 1.5e-127 10-184
no_ID  
Seg seg seg NA 195-215
255-272
289-306
superfamily SSF54585 Cdc48 4.3e-17 106-196
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr4.CM0042.1300.nc 319 0.056 0.279 0.067 0.823 _ 3
Wolf-PSORT
chr4.CM0042.1300.nc	cysk 8, nucl 6
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr4.CM0042.1300.nc Not targeted -27.712 -0.264 -0.280 25.82% -27.168