Miyakogusa Predicted Gene

chr4.CM0006.640.nd
Related links:
Predicted Sequence Links:
Genome Sequence: CM0006
Proteome Analysis:
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7PDN2_VITVI 2736 75.5 82.8 (tr|A7PDN2) Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00016348001 PE=4 SV=1
TAIR_pep AT3G43300.1 2565 71.3 80.3 | Symbols: ATMIN7 | ATMIN7 (ARABIDOPSIS THALIANA HOPM INTERACTOR 7); guanyl-nucleotide exchange factor/ protein binding | chr3:15245223-15256022 REVERSE
Medicago IMGA|CT009656_22.5 407 37.3 55.4 SEC7-like chr05_pseudomolecule_IMGAG_V2 36773730-36768030 E EGN_Mt071002 20080227
Soybean Glyma13g17610.1 3131 86.0 89.9  
Lotus Consensus KMC010848A_C01 866 99.8 99.8 KMC010848A_c01
3' Unigene KMC010848A_C01 793 99.3 99.3 KMC010848A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr4.CM0006.640.nd length: 1761 aa.
IPR000904 SEC7-like
method AccNumber shortName E-value location
Molecular Function GO:0005086 ARF guanyl-nucleotide exchange factor activity    
Cellular Component GO:0005622 intracellular    
Biological Process GO:0032012 regulation of ARF protein signal transduction    
HMMPfam PF01369 Sec7 2.1e-77 589-774
HMMSmart SM00222 no description 1.6e-83 589-774
ProfileScan PS50190 SEC7 42.610 585-772
superfamily SSF48425 Sec7 4.1e-82 587-786
no_ID  
Coil coil coiled-coil NA 586-607
Gene3D 1.10.1000.11 no description 2.6e-43 665-780
Gene3D 1.10.220.20 no description 7.8e-24 581-664
HMMPanther PTHR10663 ARF 0 600-1437
1512-1644
1663-1761
HMMPanther PTHR10663:SF5 GUANINE 0 600-1437
1512-1644
1663-1761
Seg seg seg NA 49-67
378-389
1344-1352
superfamily SSF48371 ARM 6.1e-22 997-1759
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr4.CM0006.640.nd 1761 0.110 0.208 0.134 0.679 _ 3
Wolf-PSORT
chr4.CM0006.640.nd	chlo 4, E.R. 3, nucl 2, plas 2, chlo_mito 2, nucl_plas 2, E.R._vacu 2, cyto_E.R. 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr4.CM0006.640.nd Not targeted -48.006 -10.862 -5.384 70.69% -31.761