Miyakogusa Predicted Gene

chr4.CM0006.350.nc
Related links:
Predicted Sequence Links:
Genome Sequence: CM0006
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A7R0A8_VITVI 1187 55.9 71.2 (tr|A7R0A8) Chromosome undetermined scaffold_301, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00011364001 PE=4 SV=1
TAIR_pep AT2G34357.1 1145 49.1 64.9 | Symbols: | binding | chr2:14506315-14512634 FORWARD
Medicago IMGA|AC174310_37.5 747 68.7 77.8 Protein of unknown function, NUC173 chr01_pseudomolecule_IMGAG_V2 16232149-16240649 E EGN_Mt071002 20080227
Soybean Glyma13g17300.1 1769 72.1 79.9  
Lotus Consensus KMC000295A_C01 684 99.2 99.2 KMC000295A_c01
3' Unigene KMC000295A_C01 1152 98.4 98.4 KMC000295A_c01
5' Unigene R_KMC002086A_C01 129 81.7 81.7 R_KMC002086A_c01
A list of protein families, domains and functional sites (searches in InterPro)
chr4.CM0006.350.nc length: 1230 aa.
IPR012978 Domain of unknown function, NUC173
method AccNumber shortName E-value location
HMMPfam PF08161 NUC173 1.6e-82 393-591
no_ID  
Coil coil coiled-coil NA 621-646
HMMPanther PTHR21576 UNCHARACTERIZED 6.6e-93 15-600
627-676
707-1025
1042-1207
HMMPanther PTHR21576:SF2 UNCHARACTERIZED 6.6e-93 15-600
627-676
707-1025
1042-1207
Seg seg seg NA 273-294
563-576
959-971
1209-1229
superfamily SSF48371 ARM 3.7e-08 3-488
715-966
Putative transmembrane regions
  From To
TM segments
SOSUI		 79 101
TargetP V1.0 Prediction Results
Name Length cTP mTP SP other Loc. RC
chr4.CM0006.350.nc 1230 0.177 0.015 0.019 0.943 _ 2
Wolf-PSORT
chr4.CM0006.350.nc	nucl 4.5, chlo 4, cysk_nucl 3, plas 2, cyto 1, mito 1, vacu 1, golg_plas 1, E.R._plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
chr4.CM0006.350.nc Targeted 1.116 0 -3.267 0.49% 4.383